DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tsp42Ed and Tspan8

DIOPT Version :10

Sequence 1:NP_523630.1 Gene:Tsp42Ed / 35613 FlyBaseID:FBgn0029507 Length:227 Species:Drosophila melanogaster
Sequence 2:NP_666122.1 Gene:Tspan8 / 216350 MGIID:2384918 Length:235 Species:Mus musculus


Alignment Length:222 Identity:63/222 - (28%)
Similarity:113/222 - (50%) Gaps:16/222 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 VKYVLFIFNILFVICGILLITFGSIMVSTIKDFSGV---GETFTANSVAI-IILVLGCVVFLVAF 68
            :||.:|.||.||.:||.|::.. :|.|...||...:   |::.|...:|: |::.:|.::.::.|
Mouse     8 LKYSMFFFNFLFWVCGTLILGL-AIWVRVSKDGKEIITSGDSSTNPFIAVNILIAVGSIIMVLGF 71

  Fly    69 MGCCGAIRENSCALTSYSVVMLVLLVSQLALIIYVWVDHVQIQQSLE-------KIVQTIWDQRK 126
            :|||||::|:.|.|..:.:.:|::|:.|:|..|.......:..:.|.       |::....|:.|
Mouse    72 LGCCGAVKESRCMLLLFFIGLLLILILQVAAGILGAAFKPEYNRILNETLYENAKLLSDNTDEAK 136

  Fly   127 TDALLMDTLQRSFKCCGL-NGFADYGITYPASCCDSPSNGT-CALTQ--VMTRSSCLKAVDSFWD 187
            .....|...|..|||||| ||.||:|..:..:.......|| ||..|  .:...:||..:...::
Mouse   137 DFQKAMIVFQSEFKCCGLENGAADWGNNFVEAKESCQCTGTDCATYQGSSVYPKTCLSLIKDLFE 201

  Fly   188 TNVSIIKYAGLGVTAVELVAFIFACCL 214
            .|:.|:.....|:..:|::..:|:..|
Mouse   202 KNIIIVIGIAFGLAVIEILGLVFSMVL 228

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EdNP_523630.1 Tetraspanin 8..216 CDD:459767 63/222 (28%)
Tspan8NP_666122.1 Tetraspanin 8..230 CDD:459767 63/222 (28%)
TM4SF3_like_LEL 106..204 CDD:239407 24/97 (25%)

Return to query results.
Submit another query.