DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Ed and tsp-9

DIOPT Version :9

Sequence 1:NP_001286152.1 Gene:Tsp42Ed / 35613 FlyBaseID:FBgn0029507 Length:227 Species:Drosophila melanogaster
Sequence 2:NP_508232.1 Gene:tsp-9 / 180472 WormBaseID:WBGene00006635 Length:233 Species:Caenorhabditis elegans


Alignment Length:253 Identity:62/253 - (24%)
Similarity:110/253 - (43%) Gaps:60/253 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDCGGVFVKYVLFIFNILFVICGILLI----------TFGSIMVSTIKDFSGVGETFTANSVA-- 53
            |.||...:|.:.|:.|....|.|.|:.          .|||.:...::...|:.:.. .|.:|  
 Worm     1 MVCGNSCIKLLFFVINFFICIFGALICGFSLWANLDKNFGSHLSDFVRQIEGIDQKL-VNEIAEY 64

  Fly    54 ----IIILVLGCVVFLVAFMGCCGAIRENSCALTSYSVVMLVLLVSQLALIIYVWVDHVQ----I 110
                .|::.:|.::|||.|.|||||..|:...|..:..::::|...:|...::...:..:    |
 Worm    65 QASLWILVAVGALLFLVGFFGCCGAGCESPVLLGLFIFIIVILTAVELGATVFAMTNREEFVSSI 129

  Fly   111 QQSLEKIVQTIWDQRKTDALLMDTLQRSFKCCGL-----NGFADYG------ITYPASCCDSPSN 164
            ||.|:|...| ::.||.    :..:|..|:|||.     |.:...|      ::.|.:|.|..|:
 Worm   130 QQVLKKSSAT-YELRKN----IKPIQNVFQCCGATAQTQNRYIQDGLCGPEPLSAPVNCFDRISH 189

  Fly   165 GTCALTQVMTRSSCLKAVDSFWDTNVSIIKYAGLGVTAVELVAFIFACCLANQTRNSQ 222
                    |.:|         |..::.::.:.   :.|:||.|.:|:|.|.   |:||
 Worm   190 --------MVQS---------WGESIVVVAFL---LLAIELFAILFSCILC---RSSQ 224

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EdNP_001286152.1 Tetraspannin 8..217 CDD:278750 56/239 (23%)
tetraspanin_LEL 104..189 CDD:239401 22/99 (22%)
tsp-9NP_508232.1 Tetraspannin 7..222 CDD:278750 56/243 (23%)
tetraspanin_LEL 116..>167 CDD:243179 14/55 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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