DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tsp42Ec and Tspan2

DIOPT Version :9

Sequence 1:NP_523629.1 Gene:Tsp42Ec / 35612 FlyBaseID:FBgn0033124 Length:232 Species:Drosophila melanogaster
Sequence 2:NP_072111.1 Gene:Tspan2 / 64521 RGDID:620982 Length:221 Species:Rattus norvegicus


Alignment Length:245 Identity:55/245 - (22%)
Similarity:94/245 - (38%) Gaps:47/245 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGCLSGIVNFILYIV---NIVFLIVGILLIVLGSIMLSDLSRF-----DVAGSGTDPNTIPICVT 57
            ||...|.:..|.|::   |::|.:.|..:|..|...     ||     |::.....|....:.:.
  Rat     1 MGRFRGGLRCIKYLLLGFNLLFWLAGSAVIAFGLWF-----RFGGTIKDLSSEEKSPEYFYVGLY 60

  Fly    58 VL---GGLIFVVSFFGCYGIFRQSVCMTGAYTSMVFVLFILQLVLTCWVFVNRSAFLGDMSNLVN 119
            ||   |.|:..|.||||.|..|:|.|:.|::.:.:.|:|..::....:.|:.:...:..:.::..
  Rat    61 VLVGAGALMMAVGFFGCCGAMRESQCVLGSFFTCLLVIFAAEVTTGVFAFIGKDVAIRHVQSMYE 125

  Fly   120 LLWDSHDYT-----AMGVL---EETFGCCGDTSYTNYNNIGLSVPGTCCGYLDRQATCNTPSVYQ 176
            ..:.  ||.     ..|.|   ...|.|||..|....                 |.||  |....
  Rat   126 EAYS--DYVRDRGRGNGTLITFHSAFQCCGKESSEQV-----------------QPTC--PKELP 169

  Fly   177 SRPGCSAKFEEFWNDNMDIIRWSGLGLCIFDLVVFLIAGALTNCMRSQNA 226
            ....|..|.|...:..:.:|...|:|  |..|.:|.:..::..|...:|:
  Rat   170 GHKNCIDKIETIISVKLQLIGIVGIG--IAGLTIFGMIFSMVLCCAIRNS 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tsp42EcNP_523629.1 Tetraspannin 7..221 CDD:278750 50/232 (22%)
tetraspanin_LEL 104..193 CDD:239401 17/96 (18%)
Tspan2NP_072111.1 Tetraspannin 10..214 CDD:278750 51/231 (22%)
CD81_like_LEL 110..186 CDD:239404 17/96 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3882
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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