DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment vimar and ima-2

DIOPT Version :9

Sequence 1:NP_995767.1 Gene:vimar / 35609 FlyBaseID:FBgn0022960 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_491824.1 Gene:ima-2 / 172329 WormBaseID:WBGene00002073 Length:531 Species:Caenorhabditis elegans


Alignment Length:304 Identity:61/304 - (20%)
Similarity:110/304 - (36%) Gaps:91/304 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 LAECFLGLTKCDDTNVRKEAAKCIAEIT-----KSEVQRKKFTKRNIIAAFLECLRQVPTSDGSM 103
            |::..:.|.:..|..||::|...::.:|     :.|:.|:.....:::|.|.|          :.
 Worm   262 LSKGLVKLVQHTDRQVRQDACWAVSYLTDGPDEQIELARESGVLPHVVAFFKE----------AE 316

  Fly   104 ELPIQICRALGNICYLNDEARDLILELEGDAVLLRLLDITTIEDVANAAQFIKVRGGLLSNYLLG 168
            .|.....|.|||:...||.....:::|.....:|.|::.|      .::..:|....|:||.:  
 Worm   317 NLVAPALRTLGNVATGNDSLTQAVIDLGSLDEILPLMEKT------RSSSIVKECCWLVSNII-- 373

  Fly   169 GEGLAKRAMELGVMKKLQGIIDIGASNVEQHEDLLLNTLP-LLSILTENVSDLNFDSSLNIQLSR 232
                      .|..|::|.::|             .|.|| |:::|........|::|.  .||.
 Worm   374 ----------AGTQKQIQAVLD-------------ANLLPVLINVLKSGDHKCQFEASW--ALSN 413

  Fly   233 ILAASTNPDLAEM---------CLELLHYQAESDEVKLILAKDGLCETIYNL------------- 275
            :....||..:..|         |..||  |..:|.:...|      ||:|.|             
 Worm   414 LAQGGTNRQVVAMLEDNVVPALCQALL--QTNTDMLNNTL------ETLYTLMLTVQNGYPHKVD 470

  Fly   276 -----------LEKYKTLASTSEARALMKLACELIVLILTGDDS 308
                       |:..:.| ..|::..:...|..:|....|.||:
 Worm   471 ILHDQVEENGGLDSLERL-QESQSEQIYTQAYRIITQFFTDDDA 513

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vimarNP_995767.1 ARM 55..155 CDD:237987 21/104 (20%)
armadillo repeat 77..118 CDD:293788 9/40 (23%)
armadillo repeat 124..165 CDD:293788 7/40 (18%)
armadillo repeat 318..343 CDD:293788
ARM 322..428 CDD:237987
armadillo repeat 351..391 CDD:293788
armadillo repeat 396..428 CDD:293788
ima-2NP_491824.1 SRP1 21..522 CDD:227396 61/304 (20%)
IBB 21..103 CDD:280005
ARM 126..248 CDD:237987
armadillo repeat 128..159 CDD:293788
armadillo repeat 167..203 CDD:293788
armadillo repeat 209..246 CDD:293788
ARM 266..374 CDD:237987 26/135 (19%)
armadillo repeat 296..331 CDD:293788 10/44 (23%)
armadillo repeat 337..372 CDD:293788 7/40 (18%)
ARM 338..454 CDD:237987 31/156 (20%)
armadillo repeat 380..416 CDD:293788 11/50 (22%)
armadillo repeat 423..454 CDD:293788 8/38 (21%)
Arm_3 470..517 CDD:292804 8/45 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
00.000

Return to query results.
Submit another query.