DRSC/TRiP Functional Genomics Resources

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Protein Alignment vimar and LOC100496678

DIOPT Version :9

Sequence 1:NP_995767.1 Gene:vimar / 35609 FlyBaseID:FBgn0022960 Length:635 Species:Drosophila melanogaster
Sequence 2:XP_031762126.1 Gene:LOC100496678 / 100496678 -ID:- Length:567 Species:Xenopus tropicalis


Alignment Length:663 Identity:179/663 - (26%)
Similarity:303/663 - (45%) Gaps:146/663 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 EIDDLIEKLKTTSVSPANTTNLLCEISA---------TKDPKLFDKHE----LAECFLGLTKCDD 56
            |:...:|.||..|....:...:...:|.         .|..||..:.:    ||:.....:.|.:
 Frog     3 ELSQHLECLKLCSGEAEDEKQIFQSLSVILLALDEDIEKSSKLLIERDILPALAKILTANSACTE 67

  Fly    57 TNVRKEAAKCIAEITKSEVQRKKFTKRNIIAAFLECLRQVPTSDGSMELPIQICRALGNICYLND 121
                 :||..:||:.|:|..||......::...:..|.:   ||  .||.:...||:|.|||.|.
 Frog    68 -----KAAHVLAELAKNEETRKPCIDTGLVMVLVPLLAR---SD--EELLLHAGRAIGRICYDNS 122

  Fly   122 EARDLILELEGDAVLLRLLDITTIEDVANAAQFIKVRGGLLSNYLLGGEGLAKRAMELGVMKKLQ 186
            :.::.:::|:..|.|:|:|                                              
 Frog   123 DIQEHLIKLDVIASLVRIL---------------------------------------------- 141

  Fly   187 GIIDIGASNVEQHEDLLLNTLPLLSILTENVSDLN------FDSSLNIQLSRILAASTNPDLAEM 245
                   ::..:::.|:...|..||    |::||:      ..:|:..||.:.|..:.|.:..|:
 Frog   142 -------TDYPENDPLVRVCLLALS----NLADLDSAKEALSKTSIARQLVKQLKRAENHERVEI 195

  Fly   246 CLELLHYQAESDEVKLIL----AKDGLCETIYNLLEKYKTLASTSEARALMKLACELIVLILTGD 306
            .:|:|...||:|.:||.|    .::.|||.|..|.:.::     :|....||.:.:::|.:|.||
 Frog   196 IIEVLQALAENDALKLQLVDASVQETLCEIIQRLQDSFQ-----AEDMCTMKSSSDVMVSLLLGD 255

  Fly   307 DSMHYLYTTP---LLKNMVDWLDSTDIDLLTTGVLALGNFARTDSHCIYFVEQQTMNKLLEVLAK 368
            :||..|:...   :.||:..||.|....|..||.||..||||.||:|:..|:...:::||::|.:
 Frog   256 ESMQKLFDNGNGIVYKNVATWLTSRHTLLQMTGALATANFARNDSNCVRMVQLGVVHQLLDLLEQ 320

  Fly   369 N--NGVKDDVRLQHALLSALRNLVIPKPNKNAVIQAGLVQTILPMLEIHQPPVVFKLLGTLRMTV 431
            :  ||   ||.:|||.|||||||.||..||..:::.|:...|..:|....|||.|||||||||..
 Frog   321 HVENG---DVAVQHAALSALRNLAIPVMNKVQMLKEGVADRIQMLLRSEMPPVQFKLLGTLRMLT 382

  Fly   432 DGQEKLALELLKNKTLIEQLVHWSKSSDYAGVTGESLRLMAWLIKHAYLSKIAYALPR-KGDAPA 495
            |||...|:.|.::..::.:||.|.::.|:.||.||:.||:|.|::::....:..|:.: ||    
 Frog   383 DGQADTAMILGQDSRMLTRLVQWCETKDHVGVRGEANRLLASLLRYSKSQDVVKAVHQAKG---- 443

  Fly   496 EQIADKIPLTQDYDRSSLSEFLANEGTVEAMVSMLTAQHLVMQNEALIALCILSVVYLSQPSEAA 560
                                       ::.:|:|.|::|.:|||||||||.|.|.:.|....|..
 Frog   444 ---------------------------LKHLVTMTTSEHAIMQNEALIALAIASAINLELVEEEF 481

  Fly   561 QA--------QLLQDELVKCEVGKKLAELISKSSDTMTKEIVENLQNCVNLLKSSEQLVAHLEQH 617
            :.        .:|:||.:..||......|:....|:   :::......||:.::.|::.||:..:
 Frog   482 KESELVSILHNILEDESMGPEVKYNSLGLLCSLLDS---DVLRRDMELVNMKQTLEKMCAHINSN 543

  Fly   618 NINELLKSIPILT 630
            .:.:....:.|||
 Frog   544 VVKQANTVLQILT 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vimarNP_995767.1 ARM 55..155 CDD:237987 25/99 (25%)
armadillo repeat 77..118 CDD:293788 11/40 (28%)
armadillo repeat 124..165 CDD:293788 5/40 (13%)
armadillo repeat 318..343 CDD:293788 10/24 (42%)
ARM 322..428 CDD:237987 49/107 (46%)
armadillo repeat 351..391 CDD:293788 18/41 (44%)
armadillo repeat 396..428 CDD:293788 13/31 (42%)
LOC100496678XP_031762126.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 233 1.000 Inparanoid score I3332
OMA 1 1.010 - - QHG52358
OrthoDB 1 1.010 - - D257055at33208
OrthoFinder 1 1.000 - - FOG0004617
OrthoInspector 1 1.000 - - otm49052
Panther 1 1.100 - - LDO PTHR10957
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X3822
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1010.080

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