DRSC/TRiP Functional Genomics Resources

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Protein Alignment vimar and si:dkey-21e13.3

DIOPT Version :10

Sequence 1:NP_995767.1 Gene:vimar / 35609 FlyBaseID:FBgn0022960 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_001314946.1 Gene:si:dkey-21e13.3 / 100150043 ZFINID:ZDB-GENE-130531-75 Length:291 Species:Danio rerio


Alignment Length:280 Identity:67/280 - (23%)
Similarity:104/280 - (37%) Gaps:70/280 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   392 PKPNKNAVIQAGLVQTILPMLEIHQPPVVFKLLGTLRMTVDGQEKLALELLKNKTLIEQLVHWSK 456
            ||.:.:|.|:|..|.|.|...|             |:..:|....:|:|  :...:.||:|    
Zfish    14 PKDSLSAAIEAISVSTELVEDE-------------LKPYLDAVLNVAIE--RKNGISEQVV---- 59

  Fly   457 SSDYAGVTGESLRLMAWLIKHAYLSKIAYALPRKGDAPA-EQIAD--------KIPLTQD----- 507
            .|....|..:.||..:.|..|.  :::...|.|  |||. :|..|        .:.|:||     
Zfish    60 ESGILPVLAQILRRKSTLTTHT--ARLVAELAR--DAPVRDQCFDTGIVSALVTLLLSQDQDLLL 120

  Fly   508 ----------YDRSSLSEFLANEGTVEAMVSMLTAQHLVMQNEALIALCILSVVYLSQPSEAAQA 562
                      ||.:...|.....|.|..:||:| .||  ..||||.:.|:|::..|:...|...:
Zfish   121 HVSQAIARICYDSNLQQERFLRLGAVPRLVSVL-LQH--SNNEALRSSCLLALCNLADMGEEDGS 182

  Fly   563 QLLQDELVKCEVGKKLAELISKSSDTMTKEI----------------VENLQNCVNLLKSSEQLV 611
            .|..:|......|:.:....|:.|...:..:                ||.||.|..:|..:..  
Zfish   183 MLSWEEGAHFGEGEHVFRGTSRYSFGFSSAVTVVRLKQWTNGQYSVAVEVLQRCSTMLWGANN-- 245

  Fly   612 AHLEQHNINEL--LKSIPIL 629
            .|...|.::..  |.|.|.|
Zfish   246 GHQNGHRLSNFSNLSSCPKL 265

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
vimarNP_995767.1 armadillo repeat 77..118 CDD:293788
armadillo repeat 124..165 CDD:293788
armadillo repeat 318..343 CDD:293788
armadillo repeat 351..391 CDD:293788
armadillo repeat 396..428 CDD:293788 7/31 (23%)
si:dkey-21e13.3NP_001314946.1 armadillo repeat 57..88 CDD:293788 8/36 (22%)
armadillo repeat 95..131 CDD:293788 5/35 (14%)
armadillo repeat 137..173 CDD:293788 14/38 (37%)
Blue background indicates that the domain is not in the aligned region.

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