DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Spn42Db and serpinf1

DIOPT Version :9

Sequence 1:NP_610244.2 Gene:Spn42Db / 35599 FlyBaseID:FBgn0033112 Length:388 Species:Drosophila melanogaster
Sequence 2:NP_989086.1 Gene:serpinf1 / 394686 XenbaseID:XB-GENE-945026 Length:409 Species:Xenopus tropicalis


Alignment Length:396 Identity:92/396 - (23%)
Similarity:167/396 - (42%) Gaps:60/396 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 AQGLEQFALCLHDHLCRASAGLNIIYSPLSIHISAAMLRMGTSEGSATAKEMDEGLRFGGLEAQQ 71
            |.....|...|:......:...|||.|||||..|.:.|.:|  .|..|...:...|.:..|...:
 Frog    45 ASSASNFGYDLYRMQANKNPNSNIIISPLSIATSLSSLSLG--GGQRTESLIQRSLYYDLLNDPE 107

  Fly    72 VAESFGVVLKSY-EQCQVLKMANGLYVMKGLQVDEQFGHILEQKFRSKPMEIDFGS-----EQAA 130
            |..::..:|.|: .|...||....:.:.:.|::...|...:|:.:.:|| ::..||     ::|.
 Frog   108 VHATYKDLLASFTSQASGLKSTWRIMLERRLRLRMDFVTQVEKFYGNKP-KVLTGSTRLDLQEAN 171

  Fly   131 SIINKWVESQTNNLIKDIIGPRVLTKDSRLCLVNGIHFKGEWSISFNEKETREEDFFGSDRPTRV 195
            ..|.|..:.:.....|:|  |..::    :.|:...:.||:|:..||.:||.:.:|. .|..|.|
 Frog   172 DFIQKQTQGKVVKFFKEI--PTSVS----ILLLGTTYLKGQWAYKFNPRETVQREFH-LDEQTSV 229

  Fly   196 RMMHVCENFFFAVLPMFEATALRMNYSA-----CNL---------AMIILLPDE-KSNLTSLEKK 245
                        .:||..:..:.:.|..     |.:         :::..||:. ..|||.:|:.
 Frog   230 ------------TVPMMSSKNIPVRYGLDSDFNCKIVQLPLTGGVSIMFFLPNTVTQNLTMIEEG 282

  Fly   246 LSDISLEVVSSAMNLEKVDVKIPSFTAEFQQELSQVLMLMGMNRIFSGQAELGGMLQSEESLFVS 310
            |:...:..:..|:....:.:.:|.....::.||.:.|....:..:|: ..:...:  |.:.|.:|
 Frog   283 LTSEFVHDIDQALQPINLVLSVPKLKLNYEAELKEALQESKLQSLFA-TPDFSKI--SSKPLKLS 344

  Fly   311 QIVHKAFIEINEVGTEAAAATAAVATFRSMPA---RQGPPKVFHANRPFFYAIKDNTHG-LLFAG 371
            .:||||.:|:||.|.|.|          ..|.   |...|..:|.:.||.:.::.|.:| |||.|
 Frog   345 YVVHKATLELNEEGAETA----------PKPEDSHRNYFPLEYHLDHPFLFVLRANDNGALLFIG 399

  Fly   372 HFITTK 377
            ..:..|
 Frog   400 KVMDPK 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Spn42DbNP_610244.2 SERPIN 12..373 CDD:238101 90/385 (23%)
serpinf1NP_989086.1 serpinF1_PEDF 31..402 CDD:381008 91/391 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11461
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.