DRSC/TRiP Functional Genomics Resources

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Protein Alignment coro and Coro1c

DIOPT Version :9

Sequence 1:NP_001260743.1 Gene:coro / 35596 FlyBaseID:FBgn0265935 Length:535 Species:Drosophila melanogaster
Sequence 2:XP_038945638.1 Gene:Coro1c / 501841 RGDID:1564490 Length:479 Species:Rattus norvegicus


Alignment Length:493 Identity:264/493 - (53%)
Similarity:342/493 - (69%) Gaps:36/493 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RVVRSSKFRHVYGQALKREQCYDNIRVSKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPHNKVG 68
            ||||.||||||:|||:|.:||||:||||:.:|||:||||||:|:|||:|::|||||:|||.:|.|
  Rat     8 RVVRQSKFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHKTG 72

  Fly    69 RIAADHPLVGGHKGPVLDIAWCPHNDNVIASGSEDCVVKVWQIPDGGLSRTLTEPVVDLVFHQRR 133
            ||...:|.|.||.||||||.||||||.|||||||||.|.|||||:.||:.:||||||.|..|.:|
  Rat    73 RIDKSYPTVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLTLSLTEPVVILEGHSKR 137

  Fly   134 VGLVLWHPSALNVLLTAGSDNQVVIWNVGTGEILVHIDS-HPDIVYSACFNWDGSKLVTTCKDKK 197
            ||:|.|||:|.||||:||.||.::||||||||.|:::|. |.|::|:..::.:||.:.|..||||
  Rat   138 VGIVAWHPTARNVLLSAGCDNAIIIWNVGTGEALINLDDMHSDMIYNVSWSRNGSLICTASKDKK 202

  Fly   198 IRIYDPRTAELESE-AMCHEGSKATRAIFLRHGLIFTTGFNRSSERQYSLRAPDALNEPIVMVEL 261
            :|:.|||..|:.:| ...|||::..|||||..|.:|||||:|.||||.:|..|..:.|||.:.|:
  Rat   203 VRVIDPRRQEIVAEKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLALWNPKNMQEPIALHEM 267

  Fly   262 DTSNGVMFPLYDADTNMIYLCGKGDSVIRYFEVTPEPPFVHYINTFQTTEPQRGIGLMPKRGCDV 326
            ||||||:.|.||.||::|||||||||.|||||:|.|.|:|||:|||.:.|||||:|.|||||.||
  Rat   268 DTSNGVLLPFYDPDTSIIYLCGKGDSSIRYFEITDESPYVHYLNTFSSKEPQRGMGYMPKRGLDV 332

  Fly   327 TTCEVAKFYRMNNNGLCQVISMTVPRKSDLFQEDLYPDTLAEDAAITAEEWIDGKDADPITFSLK 391
            ..||:|:|::::.. .|:.|.|||||||||||:||||||...:||:.||||.:||:||||..|||
  Rat   333 NKCEIARFFKLHER-KCEPIIMTVPRKSDLFQDDLYPDTAGPEAALEAEEWFEGKNADPILISLK 396

  Fly   392 DRVSIVQGGYVSSSVNKSLPAKKAGNILNKPRGDSASS-----GATSSSAGGGNFASGNNNEASE 451
            .       ||:... |:.|...|...:.:||..:..|.     ..|:.:                
  Rat   397 H-------GYIPGK-NRDLKVVKKNILDSKPAANKKSDLICAPKKTTDT---------------- 437

  Fly   452 GGPPAAVLSEKDLRTIQDEIRKLKAIIVKQENRIRALE 489
                |:|.:|..|..|..||:.:|..|..|:.||..||
  Rat   438 ----ASVQNEAKLDEILKEIKSIKDTICNQDERISKLE 471

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coroNP_001260743.1 DUF1899 7..64 CDD:286094 40/56 (71%)
WD40 repeat 37..78 CDD:293791 25/40 (63%)
WD40 79..294 CDD:295369 130/216 (60%)
WD40 repeat 85..129 CDD:293791 33/43 (77%)
WD40 repeat 134..171 CDD:293791 24/36 (67%)
WD40 repeat 178..213 CDD:293791 14/35 (40%)
WD40 repeat 220..260 CDD:293791 21/39 (54%)
WD40 repeat 267..308 CDD:293791 28/40 (70%)
WD40_4 343..385 CDD:292916 28/41 (68%)
Coro1cXP_038945638.1 WD40 13..>407 CDD:421866 240/402 (60%)
WD40 repeat 41..83 CDD:293791 26/41 (63%)
WD40 repeat 89..133 CDD:293791 33/43 (77%)
WD40 repeat 138..175 CDD:293791 24/36 (67%)
WD40 repeat 183..218 CDD:293791 14/34 (41%)
WD40 repeat 226..265 CDD:293791 21/38 (55%)
WD40 repeat 273..314 CDD:293791 28/40 (70%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166348862
Domainoid 1 1.000 174 1.000 Domainoid score I3570
eggNOG 1 0.900 - - E1_COG1985
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56537
Inparanoid 1 1.050 525 1.000 Inparanoid score I1194
OMA 1 1.010 - - QHG53996
OrthoDB 1 1.010 - - D179930at33208
OrthoFinder 1 1.000 - - FOG0000390
OrthoInspector 1 1.000 - - otm45663
orthoMCL 1 0.900 - - OOG6_100479
Panther 1 1.100 - - O PTHR10856
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X216
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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