DRSC/TRiP Functional Genomics Resources

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Protein Alignment coro and Coro1b

DIOPT Version :9

Sequence 1:NP_001260743.1 Gene:coro / 35596 FlyBaseID:FBgn0265935 Length:535 Species:Drosophila melanogaster
Sequence 2:NP_062095.2 Gene:Coro1b / 29474 RGDID:2382 Length:484 Species:Rattus norvegicus


Alignment Length:504 Identity:272/504 - (53%)
Similarity:354/504 - (70%) Gaps:27/504 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSFR-VVRSSKFRHVYGQALKREQCYDNIRVSKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPH 64
            |||| |||.||||||:||.:|.:|||::||||:.:||||||||||||||:|||::|||||:|||.
  Rat     1 MSFRKVVRQSKFRHVFGQPVKNDQCYEDIRVSRVTWDSTFCAVNPKFLAVIVEASGGGAFMVLPL 65

  Fly    65 NKVGRIAADHPLVGGHKGPVLDIAWCPHNDNVIASGSEDCVVKVWQIPDGGLSRTLTEPVVDLVF 129
            ||.|||...:|.|.||.||||||.||||||.|||||||||.|.|||||:.||:..||||||.|..
  Rat    66 NKTGRIDKAYPTVCGHTGPVLDIDWCPHNDEVIASGSEDCTVMVWQIPENGLTSPLTEPVVVLEG 130

  Fly   130 HQRRVGLVLWHPSALNVLLTAGSDNQVVIWNVGTGEILVHIDS-HPDIVYSACFNWDGSKLVTTC 193
            |.:|||::.|||:|.||||:||.||.|:||||||.|.|..:|| |||::|:..:|.:||...|.|
  Rat   131 HTKRVGIITWHPTARNVLLSAGCDNVVLIWNVGTAEELYRLDSLHPDLIYNVSWNHNGSLFCTAC 195

  Fly   194 KDKKIRIYDPRTAELESE-AMCHEGSKATRAIFLRHGLIFTTGFNRSSERQYSLRAPDALNEPIV 257
            |||.:||.|||...|.:| ...|||::..|||||..|.:|||||:|.||||.:|..|:...||:.
  Rat   196 KDKSVRIIDPRRGTLVAEREKAHEGARPMRAIFLADGKVFTTGFSRMSERQLALWDPENFEEPMA 260

  Fly   258 MVELDTSNGVMFPLYDADTNMIYLCGKGDSVIRYFEVTPEPPFVHYINTFQTTEPQRGIGLMPKR 322
            :.|||:|||.:.|.||.||:::|:||||||.|||||:|.|||::|::|||.:.|||||:|.||||
  Rat   261 LQELDSSNGALLPFYDPDTSVVYVCGKGDSSIRYFEITDEPPYIHFLNTFTSKEPQRGMGSMPKR 325

  Fly   323 GCDVTTCEVAKFYRMNNNGLCQVISMTVPRKSDLFQEDLYPDTLAEDAAITAEEWIDGKDADPIT 387
            |.:|:.||:|:||:::.. .|:.|.|||||||||||:||||||...|||:.||:|:.|:|||||.
  Rat   326 GLEVSKCEIARFYKLHER-KCEPIVMTVPRKSDLFQDDLYPDTAGPDAALEAEDWVSGQDADPIL 389

  Fly   388 FSLKDRVSIVQGGYVSSSVNKSLPAKKAGNIL--NKPRGDSASSGATSSSAGGGNFASGNNNEAS 450
            .||::       .||.|. .:.|...:. |:|  :||.|.|.|..:|:::.  .:..|||...:.
  Rat   390 ISLRE-------AYVPSK-QRDLKVSRR-NVLSDSKPAGYSRSGVSTATAI--TDIPSGNLAGSG 443

  Fly   451 EGGPPAAVLSEKDLRTIQDEIRKLKAIIVKQENRIRALEAKEDARNKNG 499
            |.|         .|..:..|:|.|:.::.:|..||..|| :...|.:||
  Rat   444 EAG---------KLEEVMQELRALRVLVKEQGERISRLE-EHLGRMENG 482

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coroNP_001260743.1 DUF1899 7..64 CDD:286094 41/56 (73%)
WD40 repeat 37..78 CDD:293791 29/40 (73%)
WD40 79..294 CDD:295369 129/216 (60%)
WD40 repeat 85..129 CDD:293791 33/43 (77%)
WD40 repeat 134..171 CDD:293791 23/36 (64%)
WD40 repeat 178..213 CDD:293791 16/35 (46%)
WD40 repeat 220..260 CDD:293791 20/39 (51%)
WD40 repeat 267..308 CDD:293791 24/40 (60%)
WD40_4 343..385 CDD:292916 28/41 (68%)
Coro1bNP_062095.2 WD40 10..480 CDD:421866 263/491 (54%)
WD40 repeat 38..80 CDD:293791 30/41 (73%)
WD 1 80..120 31/39 (79%)
WD40 repeat 86..130 CDD:293791 33/43 (77%)
WD 2 130..170 25/39 (64%)
WD40 repeat 135..172 CDD:293791 23/36 (64%)
WD 3 174..213 18/38 (47%)
WD40 repeat 180..215 CDD:293791 16/34 (47%)
WD 4 217..260 23/42 (55%)
WD40 repeat 223..263 CDD:293791 20/39 (51%)
WD 5 265..305 25/39 (64%)
WD40 repeat 270..311 CDD:293791 24/40 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166348860
Domainoid 1 1.000 174 1.000 Domainoid score I3570
eggNOG 1 0.900 - - E1_COG1985
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 525 1.000 Inparanoid score I1194
OMA 1 1.010 - - QHG53996
OrthoDB 1 1.010 - - D179930at33208
OrthoFinder 1 1.000 - - FOG0000390
OrthoInspector 1 1.000 - - otm45663
orthoMCL 1 0.900 - - OOG6_100479
Panther 1 1.100 - - LDO PTHR10856
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X216
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.770

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