DRSC/TRiP Functional Genomics Resources

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Protein Alignment coro and CORO1C

DIOPT Version :9

Sequence 1:NP_001260743.1 Gene:coro / 35596 FlyBaseID:FBgn0265935 Length:535 Species:Drosophila melanogaster
Sequence 2:NP_001098707.1 Gene:CORO1C / 23603 HGNCID:2254 Length:527 Species:Homo sapiens


Alignment Length:494 Identity:265/494 - (53%)
Similarity:341/494 - (69%) Gaps:38/494 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 RVVRSSKFRHVYGQALKREQCYDNIRVSKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPHNKVG 68
            ||||.||||||:|||:|.:||||:||||:.:|||:||||||:|:|||:|::|||||:|||.:|.|
Human    56 RVVRQSKFRHVFGQAVKNDQCYDDIRVSRVTWDSSFCAVNPRFVAIIIEASGGGAFLVLPLHKTG 120

  Fly    69 RIAADHPLVGGHKGPVLDIAWCPHNDNVIASGSEDCVVKVWQIPDGGLSRTLTEPVVDLVFHQRR 133
            ||...:|.|.||.||||||.||||||.|||||||||.|.|||||:.||:.:||||||.|..|.:|
Human   121 RIDKSYPTVCGHTGPVLDIDWCPHNDQVIASGSEDCTVMVWQIPENGLTLSLTEPVVILEGHSKR 185

  Fly   134 VGLVLWHPSALNVLLTAGSDNQVVIWNVGTGEILVHIDS-HPDIVYSACFNWDGSKLVTTCKDKK 197
            ||:|.|||:|.||||:||.||.::||||||||.|:::|. |.|::|:..:|.:||.:.|..||||
Human   186 VGIVAWHPTARNVLLSAGCDNAIIIWNVGTGEALINLDDMHSDMIYNVSWNRNGSLICTASKDKK 250

  Fly   198 IRIYDPRTAELESE-AMCHEGSKATRAIFLRHGLIFTTGFNRSSERQYSLRAPDALNEPIVMVEL 261
            :|:.|||..|:.:| ...|||::..|||||..|.:|||||:|.||||.:|..|..:.|||.:.|:
Human   251 VRVIDPRKQEIVAEKEKAHEGARPMRAIFLADGNVFTTGFSRMSERQLALWNPKNMQEPIALHEM 315

  Fly   262 DTSNGVMFPLYDADTNMIYLCGKGDSVIRYFEVTPEPPFVHYINTFQTTEPQRGIGLMPKRGCDV 326
            ||||||:.|.||.||::|||||||||.|||||:|.|.|:|||:|||.:.|||||:|.|||||.||
Human   316 DTSNGVLLPFYDPDTSIIYLCGKGDSSIRYFEITDESPYVHYLNTFSSKEPQRGMGYMPKRGLDV 380

  Fly   327 TTCEVAKFYRMNNNGLCQVISMTVPRKSDLFQEDLYPDTLAEDAAITAEEWIDGKDADPITFSLK 391
            ..||:|:|::::.. .|:.|.|||||||||||:||||||...:||:.||||.:||:||||..|||
Human   381 NKCEIARFFKLHER-KCEPIIMTVPRKSDLFQDDLYPDTAGPEAALEAEEWFEGKNADPILISLK 444

  Fly   392 DRVSIVQGGYVSSSVNKSLPAKKAGNILNKPRGD------SASSGATSSSAGGGNFASGNNNEAS 450
            .       ||:... |:.|...|...:.:||..:      |.....|.:                
Human   445 H-------GYIPGK-NRDLKVVKKNILDSKPTANKKCDLISIPKKTTDT---------------- 485

  Fly   451 EGGPPAAVLSEKDLRTIQDEIRKLKAIIVKQENRIRALE 489
                 |:|.:|..|..|..||:.:|..|..|:.||..||
Human   486 -----ASVQNEAKLDEILKEIKSIKDTICNQDERISKLE 519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coroNP_001260743.1 DUF1899 7..64 CDD:286094 40/56 (71%)
WD40 repeat 37..78 CDD:293791 25/40 (63%)
WD40 79..294 CDD:295369 131/216 (61%)
WD40 repeat 85..129 CDD:293791 33/43 (77%)
WD40 repeat 134..171 CDD:293791 24/36 (67%)
WD40 repeat 178..213 CDD:293791 15/35 (43%)
WD40 repeat 220..260 CDD:293791 21/39 (54%)
WD40 repeat 267..308 CDD:293791 28/40 (70%)
WD40_4 343..385 CDD:292916 28/41 (68%)
CORO1CNP_001098707.1 DUF1899 59..116 CDD:286094 40/56 (71%)
WD40 repeat 89..131 CDD:293791 26/41 (63%)
WD40 128..353 CDD:295369 135/224 (60%)
WD40 repeat 137..181 CDD:293791 33/43 (77%)
WD40 repeat 186..223 CDD:293791 24/36 (67%)
WD40 repeat 231..266 CDD:293791 15/34 (44%)
WD40 repeat 274..313 CDD:293791 21/38 (55%)
WD40 repeat 321..362 CDD:293791 28/40 (70%)
WD40_4 396..438 CDD:292916 28/41 (68%)
Mt_ATP-synt_D <471..>527 CDD:283519 16/70 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165154991
Domainoid 1 1.000 174 1.000 Domainoid score I3679
eggNOG 1 0.900 - - E1_COG1985
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H56537
Inparanoid 1 1.050 530 1.000 Inparanoid score I1222
Isobase 1 0.950 - 0 Normalized mean entropy S944
OMA 1 1.010 - - QHG53996
OrthoDB 1 1.010 - - D179930at33208
OrthoFinder 1 1.000 - - FOG0000390
OrthoInspector 1 1.000 - - otm41540
orthoMCL 1 0.900 - - OOG6_100479
Panther 1 1.100 - - O PTHR10856
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R238
SonicParanoid 1 1.000 - - X216
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1716.750

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