DRSC/TRiP Functional Genomics Resources

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Protein Alignment coro and pod-1

DIOPT Version :9

Sequence 1:NP_001260743.1 Gene:coro / 35596 FlyBaseID:FBgn0265935 Length:535 Species:Drosophila melanogaster
Sequence 2:NP_001263735.1 Gene:pod-1 / 176784 WormBaseID:WBGene00004075 Length:1136 Species:Caenorhabditis elegans


Alignment Length:555 Identity:140/555 - (25%)
Similarity:255/555 - (45%) Gaps:52/555 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 SSKFRHVYG-QALKREQCYDNIRVSKSSW---DSTFCAVNPKFLAIIVESAGGGAFIVLPHNKVG 68
            :||||||.| |..|....:.|:|...:..   .:..|..| ||.|  |..||.|...:...|:.|
 Worm   598 TSKFRHVDGQQGTKSGAVFSNLRNVNTRLPPESNGVCCSN-KFAA--VPLAGLGVIGIYDVNEPG 659

  Fly    69 RIAADHPLVG-GHKGPVLDIAWCPHNDNVIASGSEDCVVKVWQIPDGGLSRTLTEPVVDLVFHQR 132
            :: .|..:.| .:|..|.|:.|.|.:|..:|.|::...:.:|::......|...||...:.....
 Worm   660 KL-PDGVMDGIFNKTLVTDLHWNPFDDEQLAVGTDCGQINLWRLTTNDGPRNEMEPEKIIKIGGE 723

  Fly   133 RVGLVLWHPSALNVLLTAGSDNQVVIWNVGTGEILVHIDSHPDIVYSACFNWDGSKLVTTCKDKK 197
            ::..:.|||.|.::|..|.|::.:.:|:|...::.....:|...:....::.||.::.:..||..
 Worm   724 KITSLRWHPLASDLLAVALSNSTIELWDVANAKLYSRFVNHTGGILGIAWSADGRRIASVGKDAT 788

  Fly   198 IRIYDPRTAE---LESEAMCHEGSKATRAIF-LRHGLIFTTGFNRSSERQ---YSLRAPDALNEP 255
            :.:::|.:.|   .|.:.:. |.::|.|.:| ....::...|..:||:||   |..:..|..:  
 Worm   789 LFVHEPASREQRVYERKTVV-ESTRAARVLFACDDRIVIVVGMTKSSQRQVQMYDAQTVDLRH-- 850

  Fly   256 IVMVELDTSNGVMFPLYDADTNMIYLCGKGDSVIRYFEVTPEPPFVHYINTFQTTEPQRGIGLMP 320
            |....:|::...:.|.||.|:|:::|.||||..:..|||..:.|::..:..|.:....:||....
 Worm   851 IYTQVIDSATQPLVPHYDYDSNVLFLSGKGDRFVNMFEVIYDSPYLLPLAPFMSPVGSQGIAFHQ 915

  Fly   321 KRGCDVTTCEVAKFYRMNNNGLCQVISMTVPR-KSDLFQEDLYPDTLAE-DAAITAEEWIDGKDA 383
            |..|:|...|....:|:::..| :.|:..||| |.|:||:||:||:|.. :...|..:|:.|:.|
 Worm   916 KLKCNVMAVEFQVCWRLSDKNL-EKITFRVPRIKKDVFQDDLFPDSLVTWEPVTTGTKWMLGEQA 979

  Fly   384 DPITFSLKDRVSIVQGGYVSSSVNKSLPAKKAGNILNKPRGDSASSGAT---SSSAGGGNFASGN 445
            .|:..|||.     .|  |.||:.:::.|....:  ..|...|.::.|.   |:|.........:
 Worm   980 APVFRSLKP-----DG--VFSSIPRAITASVRHS--EMPSSSSTTNSAAQTPSTSVTHSTTEKHH 1035

  Fly   446 NNEASEGGPPAAV-------LSEKDLRTIQDEIRKLKAIIVKQENRIRALEAKEDARNKNGSDAA 503
            :::..:...|.:|       :....:.:.|...||..:|...:|........:.|..:....|||
 Worm  1036 HHQHHQHQEPTSVPTPSSRNMQSCGVESTQQPDRKQVSIQYSEEEGSEYFTDELDDVDDEIDDAA 1100

  Fly   504 PASAGAATSDGKASESANDHA---STSAGTSKDED 535
            .|:        :|:|:....|   .|:|..|::||
 Worm  1101 AAA--------RAAENIRIPACLLQTAAQKSEEED 1127

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coroNP_001260743.1 DUF1899 7..64 CDD:286094 20/59 (34%)
WD40 repeat 37..78 CDD:293791 12/40 (30%)
WD40 79..294 CDD:295369 53/221 (24%)
WD40 repeat 85..129 CDD:293791 10/43 (23%)
WD40 repeat 134..171 CDD:293791 9/36 (25%)
WD40 repeat 178..213 CDD:293791 7/37 (19%)
WD40 repeat 220..260 CDD:293791 11/43 (26%)
WD40 repeat 267..308 CDD:293791 14/40 (35%)
WD40_4 343..385 CDD:292916 17/43 (40%)
pod-1NP_001263735.1 DUF1899 7..106 CDD:286094
WD40 138..>277 CDD:295369
WD40 repeat 175..211 CDD:293791
WD40 repeat 218..255 CDD:293791
WD40 repeat 261..302 CDD:293791
WD40 repeat 309..350 CDD:293791
WD40_4 384..427 CDD:292916
DUF1899 598..652 CDD:286094 20/56 (36%)
PTZ00421 599..1029 CDD:173611 120/446 (27%)
WD40 repeat 676..720 CDD:293791 10/43 (23%)
WD40 716..>791 CDD:295369 14/74 (19%)
WD40 repeat 725..762 CDD:293791 9/36 (25%)
WD40 repeat 769..809 CDD:293791 7/40 (18%)
WD40 repeat 816..855 CDD:293791 9/40 (23%)
WD40 repeat 863..903 CDD:293791 14/39 (36%)
WD40_4 937..981 CDD:292916 18/44 (41%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D179930at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.920

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