DRSC/TRiP Functional Genomics Resources

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Protein Alignment coro and CORO1A

DIOPT Version :9

Sequence 1:NP_001260743.1 Gene:coro / 35596 FlyBaseID:FBgn0265935 Length:535 Species:Drosophila melanogaster
Sequence 2:XP_016878374.1 Gene:CORO1A / 11151 HGNCID:2252 Length:463 Species:Homo sapiens


Alignment Length:448 Identity:240/448 - (53%)
Similarity:315/448 - (70%) Gaps:23/448 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSFRVVRSSKFRHVYGQALKREQCYDNIRVSKSSWDSTFCAVNPKFLAIIVESAGGGAFIVLPHN 65
            ||.:||||||||||:||..|.:|||:::|||:::|||.||||||||:|:|.|::|||||:|||..
Human     1 MSRQVVRSSKFRHVFGQPAKADQCYEDVRVSQTTWDSGFCAVNPKFVALICEASGGGAFLVLPLG 65

  Fly    66 KVGRIAADHPLVGGHKGPVLDIAWCPHNDNVIASGSEDCVVKVWQIPDGGLSRTLTEPVVDLVFH 130
            |.||:..:.|.|.||..||||||||||||||||||||||.|.||:||||||...|.||||.|..|
Human    66 KTGRVDKNAPTVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLMLPLREPVVTLEGH 130

  Fly   131 QRRVGLVLWHPSALNVLLTAGSDNQVVIWNVGTGEILVHI--DSHPDIVYSACFNWDGSKLVTTC 193
            .:|||:|.||.:|.||||:||.||.:::|:||||..::.:  :.|||.:||..::.||..:.|:|
Human   131 TKRVGIVAWHTTAQNVLLSAGCDNVIMVWDVGTGAAMLTLGPEVHPDTIYSVDWSRDGGLICTSC 195

  Fly   194 KDKKIRIYDPRTAELESEA-MCHEGSKATRAIFLRHGLIFTTGFNRSSERQYSLRAPDALNEPIV 257
            :||::||.:||...:.:|. ..|||::..||:|:..|.|.||||:|.||||.:|.....|.||:.
Human   196 RDKRVRIIEPRKGTVVAEKDRPHEGTRPVRAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLS 260

  Fly   258 MVELDTSNGVMFPLYDADTNMIYLCGKGDSVIRYFEVTPEPPFVHYINTFQTTEPQRGIGLMPKR 322
            :.|||||:||:.|.:|.|||::||||||||.|||||:|.|.||:||::.|.:.|.|||:|.||||
Human   261 LQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKR 325

  Fly   323 GCDVTTCEVAKFYRMNNNGLCQVISMTVPRKSDLFQEDLYPDTLAEDAAITAEEWIDGKDADPIT 387
            |.:|..||:|:||:::.. .|:.|:||||||||||||||||.|...|.|:|||||:.|:||.|:.
Human   326 GLEVNKCEIARFYKLHER-RCEPIAMTVPRKSDLFQEDLYPPTAGPDPALTAEEWLGGRDAGPLL 389

  Fly   388 FSLKDRVSIVQGGYVSSS-----VNKSLPAKKAGNILNKPRGDSASSGATSSSAGGGN 440
            .||||       |||...     ||:.|..       .:.|....:||..||..|.|:
Human   390 ISLKD-------GYVPPKSRELRVNRGLDT-------GRRRAAPEASGTPSSVRGLGS 433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
coroNP_001260743.1 DUF1899 7..64 CDD:286094 38/56 (68%)
WD40 repeat 37..78 CDD:293791 24/40 (60%)
WD40 79..294 CDD:295369 121/217 (56%)
WD40 repeat 85..129 CDD:293791 35/43 (81%)
WD40 repeat 134..171 CDD:293791 19/38 (50%)
WD40 repeat 178..213 CDD:293791 13/35 (37%)
WD40 repeat 220..260 CDD:293791 18/39 (46%)
WD40 repeat 267..308 CDD:293791 25/40 (63%)
WD40_4 343..385 CDD:292916 29/41 (71%)
CORO1AXP_016878374.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165154992
Domainoid 1 1.000 174 1.000 Domainoid score I3679
eggNOG 1 0.900 - - E1_COG1985
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 530 1.000 Inparanoid score I1222
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53996
OrthoDB 1 1.010 - - D179930at33208
OrthoFinder 1 1.000 - - FOG0000390
OrthoInspector 1 1.000 - - otm41540
orthoMCL 1 0.900 - - OOG6_100479
Panther 1 1.100 - - O PTHR10856
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R238
SonicParanoid 1 1.000 - - X216
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1514.800

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