DRSC/TRiP Functional Genomics Resources

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Protein Alignment SdhB and SDH2-1

DIOPT Version :9

Sequence 1:NP_477101.1 Gene:SdhB / 35590 FlyBaseID:FBgn0014028 Length:297 Species:Drosophila melanogaster
Sequence 2:NP_001118718.1 Gene:SDH2-1 / 822359 AraportID:AT3G27380 Length:279 Species:Arabidopsis thaliana


Alignment Length:277 Identity:167/277 - (60%)
Similarity:202/277 - (72%) Gaps:16/277 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 LATEARQILSRVGSLVARNQMRAISNGTAQLEQQAQPKEAQEPQIKKFEIYRWNPDNAGEKPYMQ 66
            |||.||.|.:|..|..|..:.:|.|.|            .:...:|.|:||||||||.| ||.:|
plant    17 LATAARLIPARWTSTGAEAETKASSGG------------GRGSNLKTFQIYRWNPDNPG-KPELQ 68

  Fly    67 TYEVDLRECGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGTNTLACISKIDINTSKS 131
            .|::||::||||||||||||||||||:|||||||||||||||||||.|.|.|||::||....|::
plant    69 NYQIDLKDCGPMVLDALIKIKNEMDPSLTFRRSCREGICGSCAMNIDGCNGLACLTKIQDEASET 133

  Fly   132 LKVYPLPHMYVVRDLVPDMNNFYEQYRNIQPWLQRKNEAGEKKGKAQYLQSVEDRSKLDGLYECI 196
             .:.|||||:|::|||.||.|||.||::|:|||:||..|...  ..:.|||.:||:||||:||||
plant   134 -TITPLPHMFVIKDLVVDMTNFYNQYKSIEPWLKRKTPASVP--AKEILQSKKDRAKLDGMYECI 195

  Fly   197 LCACCSTSCPSYWWNAEKYLGPAVLMQAYRWIIDSRDENSAERLNKLKDPFSVYRCHTIMNCTRT 261
            |||||||||||||||.|.|||||.|:.|.|||.|||||.:.|||..:.|.|.:||||||:||.|.
plant   196 LCACCSTSCPSYWWNPESYLGPAALLHANRWISDSRDEYTKERLEAIDDEFKLYRCHTILNCARA 260

  Fly   262 CPKGLNPGRAIAEIKKL 278
            ||||||||:.|..||:|
plant   261 CPKGLNPGKQITHIKQL 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdhBNP_477101.1 PLN00129 6..279 CDD:215067 164/273 (60%)
SDH2-1NP_001118718.1 PLN00129 1..279 CDD:215067 167/277 (60%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 165 1.000 Domainoid score I1211
eggNOG 1 0.900 - - E1_COG0479
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2255
Inparanoid 1 1.050 346 1.000 Inparanoid score I627
OMA 1 1.010 - - QHG54746
OrthoDB 1 1.010 - - D1264157at2759
OrthoFinder 1 1.000 - - FOG0003194
OrthoInspector 1 1.000 - - mtm957
orthoMCL 1 0.900 - - OOG6_100664
Panther 1 1.100 - - O PTHR11921
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1851
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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