DRSC/TRiP Functional Genomics Resources

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Protein Alignment SdhB and sdhb-1

DIOPT Version :9

Sequence 1:NP_477101.1 Gene:SdhB / 35590 FlyBaseID:FBgn0014028 Length:297 Species:Drosophila melanogaster
Sequence 2:NP_495992.1 Gene:sdhb-1 / 174482 WormBaseID:WBGene00006433 Length:298 Species:Caenorhabditis elegans


Alignment Length:303 Identity:192/303 - (63%)
Similarity:226/303 - (74%) Gaps:27/303 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MLATEARQILSRVGSLVARNQMRAISNGTAQLEQQAQPKEAQEP--------------QIKKFEI 51
            |||..||.:.|   :.:|.|.:||.|...|    .|...||..|              :||.|||
 Worm     1 MLARSARLLHS---AELAANAIRAASGAPA----TAAAAEASFPSTDDVAAKTKKTGNRIKTFEI 58

  Fly    52 YRWNPDNAGEKPYMQTYEVDLRECGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNIGGTN 116
            ||:||:..|.||.:|.::|||.:||.|:||||||||||:||||||||||||||||||||||||.|
 Worm    59 YRFNPEAPGAKPTVQKFDVDLDQCGTMILDALIKIKNEVDPTLTFRRSCREGICGSCAMNIGGQN 123

  Fly   117 TLACISKIDINTSKSLKVYPLPHMYVVRDLVPDMNNFYEQYRNIQPWLQRKN--EAGEKKGKAQY 179
            |||||.|||.:||||.|:||||||:||:|||||||.||.||.:||||:|:|.  ..|||    |.
 Worm   124 TLACICKIDSDTSKSTKIYPLPHMFVVKDLVPDMNLFYAQYASIQPWIQKKTPLTLGEK----QM 184

  Fly   180 LQSVEDRSKLDGLYECILCACCSTSCPSYWWNAEKYLGPAVLMQAYRWIIDSRDENSAERLNKLK 244
            .|||.:|.:||||||||||||||||||||||||:||||||||||||||:|||||:.:.|||:::.
 Worm   185 HQSVAERDRLDGLYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWVIDSRDDYATERLHRMH 249

  Fly   245 DPFSVYRCHTIMNCTRTCPKGLNPGRAIAEIKKLLSGLASKPA 287
            |.||.::||||||||:||||.|||.:||.|||.||:|..||||
 Worm   250 DSFSAFKCHTIMNCTKTCPKHLNPAKAIGEIKSLLTGFTSKPA 292

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SdhBNP_477101.1 PLN00129 6..279 CDD:215067 182/288 (63%)
sdhb-1NP_495992.1 PLN00129 1..284 CDD:215067 185/293 (63%)
Fer2_3 55..161 CDD:289830 80/105 (76%)
Fer4_17 199..272 CDD:290268 56/72 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 176 1.000 Domainoid score I2155
eggNOG 1 0.900 - - E1_COG0479
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2255
Inparanoid 1 1.050 382 1.000 Inparanoid score I1182
Isobase 1 0.950 - 0 Normalized mean entropy S140
OMA 1 1.010 - - QHG54746
OrthoDB 1 1.010 - - D1264157at2759
OrthoFinder 1 1.000 - - FOG0003194
OrthoInspector 1 1.000 - - otm14600
orthoMCL 1 0.900 - - OOG6_100664
Panther 1 1.100 - - LDO PTHR11921
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R309
SonicParanoid 1 1.000 - - X1851
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1514.860

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