DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Epac and rgl2

DIOPT Version :9

Sequence 1:NP_001097202.2 Gene:Epac / 35588 FlyBaseID:FBgn0085421 Length:1006 Species:Drosophila melanogaster
Sequence 2:XP_005158441.1 Gene:rgl2 / 65227 ZFINID:ZDB-GENE-010131-1 Length:744 Species:Danio rerio


Alignment Length:552 Identity:106/552 - (19%)
Similarity:183/552 - (33%) Gaps:196/552 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   463 LQEHGKDVLVLERVAKQ-------------RGQHSAFKYTVMSGTPAKMLEHLLET-RLGQSVGG 513
            :.|..:|.::...|.||             |.||      |.:||..|::.|||.: .:|.|   
Zfish    73 VSEMEEDGIIYTVVVKQGPGSPTSPQSTAARSQH------VKAGTEEKLVLHLLHSFSMGDS--- 128

  Fly   514 MDPFLDDFLLTHIVFMPVVQLVDELANYFHC-------DAHEDAQTPEDREYIINFKKRVIQFMQ 571
              .|:..||.|:..|....:::|.|.    |       ::|.:::.        .|.|.|.....
Zfish   129 --SFISIFLSTYRSFTSTQRVLDILI----CRLENPPGESHSNSRQ--------MFNKAVCTVFS 179

  Fly   572 KWVMAVRHAAFEEPSVCDFIEDLAAEVEADPD-------LNEETSIVHNVLTQMARYQEDRNQNA 629
            .|             :.|:.||..:  .:||.       |....|....:.:::.|..|:.::..
Zfish   180 TW-------------MTDYPEDFRS--LSDPSRLLRLAPLLPTDSSGAEIKSRLLRIAEELSEKT 229

  Fly   630 GQKWKLPPNGQPICLFSGNATPSKTVIRPDDDIIFRVYCADHTYCTLRFPMHTTAELIKACAADK 694
                         .|.:..:.|:|.::.|.:...|     |.| ..|.||....||         
Zfish   230 -------------LLSASLSDPTKGLLSPPNPSDF-----DAT-SVLGFPSSVIAE--------- 266

  Fly   695 LQLNRGPEDLVLVEVKSNGERSVFKDNDVSIPTGLSLNGRLFVSVKDHLDALTQLQEQECPTEGV 759
             ||.|...||.|..|..:...|::...|                        .:.||..|     
Zfish   267 -QLTRIETDLFLKLVPHHCLGSLWSQRD------------------------KKGQEGAC----- 301

  Fly   760 DIDLEILSTKELAYHITLFEWDLFWAVHEYELLYHTFGRHHFGKITANLDVFLRRFNEVQ---YW 821
                                    |:|.                  |.:..|.|..|.|.   .|
Zfish   302 ------------------------WSVR------------------ATIKQFNRLANAVTASCLW 324

  Fly   822 IVTELVSTPSLSKRVGLVRKFIKLAAYCKEYQNLNAFFAVVMGLSNMAVSRLQQTWEKIPSKFRK 886
            :.| |.|    .:|..|:.|:|.:|..|:..:|.::.:|::..|.:..:.||::||::...:..|
Zfish   325 MTT-LKS----QQRARLLEKWISVAEACRTRKNFSSLYAILSALQSNPIHRLRKTWQETDREAVK 384

  Fly   887 IFQEFEALIDPSRNHRAYRV---------------------FVGKLQPPLIPFMPLLLKDMTFAH 930
            .::|...:.....|:...|.                     |.|......:|::.:.|:|:|...
Zfish   385 RYEELSDIFSEKDNYSQSRELLKEEGTSKFANHDTKINNRRFTGSCAQGTVPYLGIFLRDLTMLD 449

  Fly   931 EGNKTSLD-GLVNFEKMHMMAQTMRTIRFCRS 961
            ...|..|: |.:||:|.....:.:..||..:|
Zfish   450 TAVKDRLENGFINFDKRRREFEVIAQIRLLQS 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EpacNP_001097202.2 Crp 28..>146 CDD:223736
CAP_ED 36..146 CDD:237999
DEP_Epac 199..330 CDD:239884
CAP_ED 352..463 CDD:237999 106/552 (19%)
Crp 373..525 CDD:223736 20/75 (27%)
RasGEF_N 489..594 CDD:279012 24/112 (21%)
UBQ 665..>714 CDD:294102 14/48 (29%)
RasGEF 766..1002 CDD:214539 43/221 (19%)
rgl2XP_005158441.1 REM 111..>190 CDD:100121 23/108 (21%)
RasGEF 256..519 CDD:214539 60/312 (19%)
UBQ 626..710 CDD:294102
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.