DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Epac and rgl1

DIOPT Version :9

Sequence 1:NP_001097202.2 Gene:Epac / 35588 FlyBaseID:FBgn0085421 Length:1006 Species:Drosophila melanogaster
Sequence 2:NP_991200.2 Gene:rgl1 / 402933 ZFINID:ZDB-GENE-040426-1816 Length:804 Species:Danio rerio


Alignment Length:565 Identity:100/565 - (17%)
Similarity:167/565 - (29%) Gaps:233/565 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly   585 PSVCDFIEDLAAEVEADPDLNEETSIVHNVLTQMARYQEDRNQNAGQKW------KLPPNGQPIC 643
            |.....::|...||        |...::||  .:.|.|..:..|.|.:|      :|||.     
Zfish    42 PRYWSSVQDWGEEV--------EEGAIYNV--TLKRVQIQQAANKGARWLGAEGDRLPPG----- 91

  Fly   644 LFSGNATPSKTVIRPDDDIIFRVYCADHTYCTLRFPMHTTAELIKACAADKLQ---LNRGPEDLV 705
                                                 ||.::| :.|....::   |.|..|.|:
Zfish    92 -------------------------------------HTVSQL-ETCKIRSIRAGTLERLVETLL 118

  Fly   706 LVEVKSNGERSVFKDNDVSIPTGLSLNGRLFVSVKDHLDAL--------------TQLQEQE--- 753
                      :.|.|||::..:......|.|.|.:..|:.|              :|.|..|   
Zfish   119 ----------TAFGDNDLTYTSIFLSTYRAFASTQSVLELLLDRYGSFEDCEGERSQCQTGESRK 173

  Fly   754 ----------------CPTE--------------------------------------------- 757
                            ||.:                                             
Zfish   174 AVRKALASILRAWLDQCPEDFQEPPSYPSLHRVLGFLQKAMPGSEPMRRAQSLLEQLRVQASLEN 238

  Fly   758 --------------GVDIDLEILSTKELAYHITLFEWDLFWAVHEY--ELLYHTFGRHH-FGKIT 805
                          |.|.::||    :|......||.||......|  .||:.....|| .|.|.
Zfish   239 ETEGGFQYINPFCLGEDEEVEI----DLQEDFFSFEVDLVAEQLTYMDALLFKKVVPHHCLGSIW 299

  Fly   806 ANLD------------VFLRRFNEVQYWIVTELVS----TPSLSKRVGLVRKFIKLAAYCKEYQN 854
            :..|            ..:.:||.|...:|:.::.    .|.|..|:  ::::|.:|..|:..:|
Zfish   300 SQRDKKDGKQSAPTIRATITQFNAVTACVVSTILRQRQIRPHLRARI--IQRWIDIAQECRIRKN 362

  Fly   855 LNAFFAVVMGLSNMAVSRLQQTWEKIPSKFRKIFQEFEALIDPSRNHRAYRVF------------ 907
            .::..|:|..|.:..:.||::||..:.....::|:|...:.....|:...|..            
Zfish   363 FSSLRAIVSALQSNPLYRLKRTWASVAKDSMQMFEELSDIFSDQNNYLTSRELLMREGTSKFASL 427

  Fly   908 --------------------VGKLQPPLIPFMPLLLKDMTFAHEGNKTSLD-GLVNFEKMHMMAQ 951
                                :|.:| ..||::...|.|:|.........:: ||:||||.....:
Zfish   428 DSCAKDHQKRSQKRLQLQKDMGAMQ-GTIPYLGTFLTDLTMLDTALPDQVEGGLINFEKRRREFE 491

  Fly   952 TMRTIRF----CRSRSLGLEP------PSPKSEGEVRSYISSFRV 986
            .:..|:.    |.|..|..:|      .|.....|..||:.|..|
Zfish   492 VIAQIKLLQSACNSYCLTPDPAFLRWFKSQPQYSEEESYVLSCEV 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EpacNP_001097202.2 Crp 28..>146 CDD:223736
CAP_ED 36..146 CDD:237999
DEP_Epac 199..330 CDD:239884
CAP_ED 352..463 CDD:237999
Crp 373..525 CDD:223736
RasGEF_N 489..594 CDD:279012 1/8 (13%)
UBQ 665..>714 CDD:294102 8/51 (16%)
RasGEF 766..1002 CDD:214539 59/283 (21%)
rgl1NP_991200.2 REM 109..232 CDD:100121 18/132 (14%)
RasGEF 266..535 CDD:238087 57/271 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 564..611
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 640..676
RalGDS_RA 684..769 CDD:176351
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3629
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.