DRSC/TRiP Functional Genomics Resources

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Protein Alignment Epac and rgl3a

DIOPT Version :9

Sequence 1:NP_001097202.2 Gene:Epac / 35588 FlyBaseID:FBgn0085421 Length:1006 Species:Drosophila melanogaster
Sequence 2:XP_005165808.1 Gene:rgl3a / 100149956 ZFINID:ZDB-GENE-101130-1 Length:785 Species:Danio rerio


Alignment Length:580 Identity:116/580 - (20%)
Similarity:201/580 - (34%) Gaps:187/580 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   535 VDE-----LANYFHCDAHEDAQTP-----EDRE----YIINFKKRVIQ-------------FMQK 572
            |||     |.::...|..|..:.|     |:.|    |.:...:..||             |||.
Zfish    35 VDEEPGVWLRSFHLLDLQEHTEDPVQEWGEEVEDGAIYGVTLHREPIQPPPDASESDAAFGFMQY 99

  Fly   573 WVMAVRHAAFEEPSVCDFIEDLAAEVEADPDLNEETSIVH------------NVLTQMARYQEDR 625
            ..:.||.  .:..::...:.:|......|||      .:|            |.|.::...:||.
Zfish   100 RTLKVRR--LKAATLDRLVTELVNPECPDPD------YMHIFLSTYRAFTCTNALIELLFQREDM 156

  Fly   626 NQNAGQKWKLPPNGQPICLFSGNATPSKTVIR-------------PDDDIIFRVYCAD--HTYCT 675
            ..|....         :|:.|  :.|  .:||             ||...: |:.|..  |..|.
Zfish   157 VTNLNNS---------VCVKS--SLP--RLIRLWLDEFHEDLRDSPDHQAL-RLLCVHLRHRLCC 207

  Fly   676 LRFPMHTTAELIKACAADKLQLNRGPEDLVLVEVKSNGERSVFKDNDVSIPTGLSLNGRLF--VS 738
            .|......|.|.|                             |:..|..|.|...:|....  .:
Zfish   208 RRLVNQADALLRK-----------------------------FQTEDKQICTSAEVNASAVENPA 243

  Fly   739 VKDHLDALTQLQEQECPTEGVDIDLEILSTKELAYHITLFEWDLFWAVHEYELLYHTFG------ 797
            .:|:||.      ||....|..:|   ...:::|..:|:.:.:||..|    :.:|..|      
Zfish   244 TEDNLDG------QEVQEIGDVLD---FPAQDIAEQLTILDAELFSKV----VPFHCLGCIWSQR 295

  Fly   798 -RHHFGKITANLDVFLRRFNEVQYWIVTELVSTPSLSK-------------RVGLVRKFIKLAAY 848
             :.....:.:.:...:.:||.|...::|.|:..|:.|.             |..::.|:|.:|..
Zfish   296 DKKENQNLVSTVRATIAQFNVVTNCVITSLLCPPATSPPGSPSCHRSSPTYRAKIIEKWISVAQE 360

  Fly   849 CKEYQNLNAFFAVVMGLSNMAVSRLQQTWEKIPSKFRKIFQEFEALID--PSRN----HRAYRVF 907
            |.:.:|.::..|::..|.:.||.||::||..|.   |:....||.|.|  |..|    :|...|.
Zfish   361 CHQLRNFSSLRAILSALQSNAVYRLKKTWAVIS---RESMAVFEHLCDTFPDENCVLINREILVE 422

  Fly   908 VG---------------KLQPPL----------IPFMPLLLKDMTFAHEGNKTSLD-GLVNFEKM 946
            .|               :|.|..          :|::...|..:|........::: ||:||||.
Zfish   423 EGNQAADVETHSAPKSPRLSPTCKHMQSSSSGEVPYLGTYLTVLTMLDTALTDNVEGGLINFEKR 487

  Fly   947 HMMAQTMRTIR----FCRSRSLGLEPPSPKSEGEVRSYISSFRVIDNQRVLTAMSQKVEP 1002
            ....:.:..||    .|...:|       :|...:.|:|:|...:.:|:.. .:|:::||
Zfish   488 RKEFEILSLIRQLQASCAHYTL-------QSHPRIISWINSSMSLSDQKSY-ELSRELEP 539

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EpacNP_001097202.2 Crp 28..>146 CDD:223736
CAP_ED 36..146 CDD:237999
DEP_Epac 199..330 CDD:239884
CAP_ED 352..463 CDD:237999
Crp 373..525 CDD:223736
RasGEF_N 489..594 CDD:279012 17/85 (20%)
UBQ 665..>714 CDD:294102 8/50 (16%)
RasGEF 766..1002 CDD:214539 60/291 (21%)
rgl3aXP_005165808.1 RasGEF_N 106..189 CDD:279012 15/103 (15%)
RasGEF 259..541 CDD:214539 63/299 (21%)
RalGDS_RA 677..763 CDD:176351
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3629
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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