DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment phtf and phtf2

DIOPT Version :9

Sequence 1:NP_610232.1 Gene:phtf / 35583 FlyBaseID:FBgn0028579 Length:880 Species:Drosophila melanogaster
Sequence 2:XP_004913085.1 Gene:phtf2 / 100496144 XenbaseID:XB-GENE-1010978 Length:757 Species:Xenopus tropicalis


Alignment Length:945 Identity:311/945 - (32%)
Similarity:434/945 - (45%) Gaps:260/945 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 KLDEIVAWYQKRIGTYDKQEWEKTVEQRILDGFNSVNLKNTKLKTELIDVDLVRGSTFPKAKPKQ 66
            |:.:.:.||||:||.||:|.|||:||||.:.|..:...|...:|.:||||||||||.|.||||:.
 Frog     4 KVTDAIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTGHVKPDLIDVDLVRGSAFAKAKPES 68

  Fly    67 SLLTVIRLAILRYVLLPLYAQWWVKQTTPNAFGFILVLYLTQLTNWAIYVLHSSRIVPLDYEKPP 131
            ...::.|..|:|.|..|.:..||::.|:...|.::.:|||.|:....:::     |.|..:..| 
 Frog    69 PWTSLTRKGIVRVVFFPFFFSWWLQVTSRVIFSWLFLLYLLQVAAIVLFI-----ITPGPHNVP- 127

  Fly   132 NGTLLQAEADGDASDKDADKESEEHAALLSALLIPCALSLLISLIHSQIVATNTASG--VSGGSS 194
                 ..|..|.                       ..|.||:..:|.|||:|.|...  :.||..
 Frog   128 -----FTEVTGS-----------------------IFLMLLLGTVHCQIVSTRTVKSPPILGGKR 164

  Fly   195 KNKLRRISASYLSDKAATRENRVRRRKKIVRVRQVEADLSQASSNISLPNRRTATSTIEVLPRPV 259
            :.|||         |||..|  |.|          |.|.|..:.|       |...|:       
 Frog   165 RRKLR---------KAAHLE--VHR----------EGDGSSTTDN-------TQEGTL------- 194

  Fly   260 TPLPSPTVTCATVPDPTTPTTPSPSVIRRSTNEETYLTTTAISPLTQPLAAIDACYDLSRKAGGA 324
                                             ::|.|:|:.:..|.....:.|.:.||.     
 Frog   195 ---------------------------------QSYGTSTSYTIGTVFRDILHAAFFLSG----- 221

  Fly   325 APESPKKRNVNWHTPIQIYATYELGEEPCSSRKVAEESAPESVGERLCSVKPDYQTRRNIGEDDG 389
                                                            |.|..:.:.::...|:|
 Frog   222 ------------------------------------------------SKKTKHSSDKSTETDNG 238

  Fly   390 FESLNGK--SSSGED--NNHSPLPNAVAVAAP--------PAPVQTNQL--------RLRLNTTN 434
            :.||.|:  ..|.||  .:|.|:...:....|        ..|.||...        |..:|.::
 Frog   239 YVSLEGRLTGKSSEDGVQSHEPVCEVLHSEEPMWGTGKNRNPPAQTKMKYKTKLDIHRAVVNVSD 303

  Fly   435 GVTASASPTEKKPQSRGNESSTSCAESDECDDA----------------DIMSSPASGCNQECTT 483
            .|::...|:......|..:.|.       ||.|                ||..|..| |:..|::
 Frog   304 EVSSEDDPSTGYTTQRNMDRSL-------CDSAIRNRKPHNYKKHYPAEDIQKSGTS-CSSRCSS 360

  Fly   484 SATD--------------W---LGVTTNSEDCSYTSDLDHSDGGLKHTAFSDEDPGELDITP--- 528
            |..|              |   |..|.....||..:|||.:.|.|.......:||.:...:|   
 Frog   361 SRQDSESTRPESETEDVLWEDLLHCTECRTSCSSETDLDSNHGNLCMKREYRDDPFQQSHSPWLH 425

  Fly   529 TTILNPHSSLDRISCTIWDQRDAKKAQLSVLEIASCIIERVDSMGEANDYIYIGVVFSFLLTLIP 593
            ||  ||  .|:::|..:|:..|.|||.:|||||:..|:.||:|......|...|.|.|.:|.|.|
 Frog   426 TT--NP--GLEKVSAIVWEGNDCKKADMSVLEISGMIMNRVNSYNPGIGYQIFGNVISLILGLTP 486

  Fly   594 IFCRLCEVTLGSDAEKASEISYFNMPQLLWEKSSASLFTLLGLAFGDSQWERMVLAL---GFVQR 655
            ...||.|   ..|.|:.:.:             |||  .|..:||| |..:.||::|   .||.|
 Frog   487 FAFRLAE---SKDLEQLATL-------------SAS--ELYSIAFG-SNTDIMVISLVLISFVVR 532

  Fly   656 LCLTLILFIIFAVAERTFKQRFLYAKLFSHLTSSRRARKSNLPHFRLNKVRNIKTWLSVRSYLKK 720
            :.|..|.|.:..|||||:|||.|:||||.||||:||||||.:|||||.||.|||.|||:|||||:
 Frog   533 VSLVWIFFFLLCVAERTYKQRLLFAKLFGHLTSARRARKSEVPHFRLKKVENIKMWLSLRSYLKR 597

  Fly   721 RGPQRSVDIIVSAAFIVTLLLLAFLSVEWLKDSAHLHTHLTL-------EALIWSITIGIFLLRF 778
            ||||||||:|||:||::|      :||.::..:..||.|.|.       |.:||.|::.:|||||
 Frog   598 RGPQRSVDVIVSSAFLLT------ISVVFICCAQLLHVHETFLDCQYNWELVIWCISLTLFLLRF 656

  Fly   779 MTLGQKIQHKYRSVSVLITEQINLYLQIEQKPKKKDELMVSNSVLKLAADLLKELETPFKLSGLS 843
            :|||.:...||.:.|:|:||||||||::|:||.||:||.:.|:|||||..|||||::||:|.||:
 Frog   657 VTLGSETSKKYSNTSILLTEQINLYLKMEKKPNKKEELTLVNNVLKLATKLLKELDSPFRLYGLT 721

  Fly   844 ANPYLFTTIKVVILSALSGVLSEVLGFKLKLHKIK 878
            .||.|:...:||||||:|||:|::|||.|||.|||
 Frog   722 MNPLLYNITQVVILSAVSGVISDLLGFNLKLWKIK 756

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
phtfNP_610232.1 Phtf-FEM1B_bdg 3..184 CDD:288944 59/180 (33%)
phtf2XP_004913085.1 Phtf-FEM1B_bdg 5..154 CDD:371909 60/182 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 317 1.000 Domainoid score I1264
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H10713
Inparanoid 1 1.050 424 1.000 Inparanoid score I1738
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D409928at33208
OrthoFinder 1 1.000 - - FOG0004060
OrthoInspector 1 1.000 - - otm47949
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X2811
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.060

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