DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chk and slc16a13

DIOPT Version :9

Sequence 1:NP_001163063.1 Gene:chk / 35578 FlyBaseID:FBgn0033095 Length:894 Species:Drosophila melanogaster
Sequence 2:XP_001920250.3 Gene:slc16a13 / 793210 ZFINID:ZDB-GENE-120907-2 Length:502 Species:Danio rerio


Alignment Length:770 Identity:145/770 - (18%)
Similarity:239/770 - (31%) Gaps:360/770 - (46%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 PDGGYGWVVVFASLVVSLIADGLSFSFGLINVELLEYFGESTSKTAWISSLFFSVPLLMGPIWSN 197
            ||||:|||||.|..|:|.:..||..|.|:..||.::||.||....:||:|:..::..||.||.:.
Zfish    20 PDGGWGWVVVGALFVISALVFGLIRSLGVFFVEFVQYFDESAQAVSWITSIGLAMQQLMSPIGAA 84

  Fly   198 LVDKYGCRKMTILGGVVSAFGFALSSFCNSIEMLMVTFGIISGLGLGIGYVTAVVSIAFWFDKKR 262
            ..:.||.|.:.::||.:|..||.|:|...|:..|.:|.|:|||||..:.:...:.|:..:|.|:|
Zfish    85 ASNVYGTRPVVMMGGFLSGLGFILASQATSLLHLYLTMGLISGLGWALVFTPTMASVMQYFTKRR 149

  Fly   263 TFATGIGASGTGIGTFVYARLTSYLIESYGWRGATLILGGTMLNACVCGALMRDPDWLIEENRLE 327
            :.|.|:|.:|.|:.:|.::.|..||:|:|.||||.|||||...|...||||:|            
Zfish   150 SLAMGLGFTGVGLASFAFSPLFQYLVEAYAWRGALLILGGLSFNMVACGALIR------------ 202

  Fly   328 SRSQSVTTFSNSSVCLEEIKKLLDTGITKEAVLDSLVTKNNTEANQQIDDPLDSALKRYRSEIFL 392
                                   ..|..|.||    .|:|:|:.|                    
Zfish   203 -----------------------PLGTPKVAV----KTENSTKLN-------------------- 220

  Fly   393 PTFLSTQELDSICEVKSLSRRSLRHKEGEEAPSRENLLSMSSGAGAYPPSTAVIGSPDDTLMGGI 457
                                                                             
Zfish   221 ----------------------------------------------------------------- 220

  Fly   458 AHEAAEEAKKAYLASIETLSPSEKRSTGRTPNGSLRSSDEGYLTQKHASSRYSLNENIFMAKHTT 522
                    |.::|.|                                                  
Zfish   221 --------KCSFLLS-------------------------------------------------- 227

  Fly   523 PSISNLKVNGLRHNSVDILSEDMHCYYSKDETFALLEPSRRIRPTVIAIPEQEQSVNSELATRRA 587
                                                                             
Zfish   228 ----------------------------------------------------------------- 227

  Fly   588 RLDSITGIRRLSRSKKPSHHRSNLRRNISIRNSNFLKDMRIHRNSIHYRGAMLNTHRYRLRASSC 652
                                                                        |...|
Zfish   228 ------------------------------------------------------------RIYEC 232

  Fly   653 PNIYRNSMTTIAKEEEDTWYDNFVDTMKSIFDFSLFLDMKFALFNLSTLFLFIWFIIPYLYLPDY 717
                                          |:.||.....|..:.::..|....:.|||::|..:
Zfish   233 ------------------------------FELSLLTHRGFVTYAVAITFFNAGYFIPYVHLVAH 267

  Fly   718 MKQYKYDVSQSAELISDVGIAQTVGMIGLGYLGDLSWMNINICYSLCMLV-----CGASVFFMPL 777
            .:...:...|:|.:||..|:|..||.:..|:..||..:.:     |.|||     .|.|:..:|:
Zfish   268 SRHIGFTEYQAAFVISITGVADIVGRVASGWASDLGKIRL-----LHMLVVWTGLLGLSLMLIPV 327

  Fly   778 LITNYMGLMVMCVIFGFTFASSFSFTPSILVSIVDLDDFTCAYGLVLLVQGVGMIAGPPIAGVIY 842
            .:. |.||:::.:::||...:......:::..||.::....|.||:.|::..|.:.|.|::|.:.
Zfish   328 AVV-YAGLLLVSIVYGFCAGAMAPLAFAVVPEIVGIERVLGALGLLQLIESAGGLLGAPLSGWLK 391

  Fly   843 EYTGRWDDTFYYAGIFIALSGVCSYLIEF---C---------EKKAPKESDSDVL 885
            :.||.:..:|..||.|:.:..:.:..:.:   |         :||:.:.|..|.|
Zfish   392 DSTGTYTVSFIAAGSFLMIGMLIAMTLPYFWSCTAPPAPSPSKKKSQEGSAEDGL 446

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chkNP_001163063.1 MFS 143..>315 CDD:119392 68/171 (40%)
MFS <685..869 CDD:119392 47/188 (25%)
slc16a13XP_001920250.3 2A0111 11..443 CDD:331689 143/765 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2504
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 1 1.000 - - otm25394
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11360
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X70
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
76.910

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