DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment chk and Slc16a12

DIOPT Version :9

Sequence 1:NP_001163063.1 Gene:chk / 35578 FlyBaseID:FBgn0033095 Length:894 Species:Drosophila melanogaster
Sequence 2:NP_001178566.1 Gene:Slc16a12 / 309525 RGDID:1311468 Length:486 Species:Rattus norvegicus


Alignment Length:736 Identity:141/736 - (19%)
Similarity:231/736 - (31%) Gaps:327/736 - (44%)


- Green bases have known domain annotations that are detailed below.


  Fly   133 PDGGYGWVVVFASLVVSLIADGLSFSFGLINVELLEYFGESTSKTAWISSLFFSVPLLMGPIWSN 197
            ||||:||::|....:|::....::....:..||...||.:..|:||||.|:...:.:|..|:.|.
  Rat    13 PDGGWGWMIVAGCFLVTICTRAVTRCISIFFVEFQTYFAQDYSQTAWIHSIVDCMTMLCAPLGSV 77

  Fly   198 LVDKYGCRKMTILGGVVSAFGFALSSFCNSIEMLMVTFGIISGLGLGIGYVTAVVSIAFWFDKKR 262
            :.::..|:...:|||::::.|..|.||..|::.|.::.|:::|||..:.|..|:..:..:|.:::
  Rat    78 VSNQLSCQAGIMLGGLLASTGLILGSFATSLKHLYLSLGVLTGLGFALCYSPAIAMVGKYFSRRK 142

  Fly   263 TFATGIGASGTGIGTFVYARLTSYLIESYGWRGATLILGGTMLNACVCGALMRDPDWLIEENRLE 327
            .||.||..||:|||||:.|.:...|||.:.||||.|||||.:||.||||||||            
  Rat   143 AFAYGIAMSGSGIGTFILAPVVQLLIEQFSWRGALLILGGFVLNLCVCGALMR------------ 195

  Fly   328 SRSQSVTTFSNSSVCLEEIKKLLDTGITKEAVLDSLVTKNNTEANQQIDDPLDSALKRYRSEIFL 392
                        .:.|:|                               ||              
  Rat   196 ------------PITLKE-------------------------------DP-------------- 203

  Fly   393 PTFLSTQELDSICEVKSLSRRSLRHKEGEEAPSRENLLSMSSGAGAYPPSTAVIGSPDDTLMGGI 457
                |..|       ||..|.:.|                                         
  Rat   204 ----SGPE-------KSHDRDAQR----------------------------------------- 216

  Fly   458 AHEAAEEAKKAYLASIETLSPSEKRSTGRTPNGSLRSSDEGYLTQKHASSRYSLNENIFMAKHTT 522
                 |:.|:|     ...||                     ||::...:|              
  Rat   217 -----EDCKQA-----SPYSP---------------------LTKEWTETR-------------- 236

  Fly   523 PSISNLKVNGLRHNSVDILSEDMHCYYSKDETFALLEPSRRIRPTVIAIPEQEQSVNSELATRRA 587
                                  :.|...:...|.|:                             
  Rat   237 ----------------------LCCSLQQGYGFLLM----------------------------- 250

  Fly   588 RLDSITGIRRLSRSKKPSHHRSNLRRNISIRNSNFLKDMRIHRNSIHYRGAMLNTHRYRLRASSC 652
                                            |:|:                             
  Rat   251 --------------------------------SDFV----------------------------- 254

  Fly   653 PNIYRNSMTTIAKEEEDTWYDNFVDTMKSIFDFSLFLDMKFALFNLSTLFLFIWFIIPYLYLPDY 717
                                             .|.:.:.|..:..|.||:   :::||      
  Rat   255 ---------------------------------VLAVSVLFMAYGCSPLFV---YLVPY------ 277

  Fly   718 MKQYKYDVS--QSAELISDVGIAQTVGMIGLGYLGDLSWM-NIN-ICYSLCMLVCGASVFFMPLL 778
              .....||  |:|.|:|.:|:...||.|..|:|.|...: |.. :||...:.:.|.....:|:|
  Rat   278 --ALSVGVSHHQAAFLMSILGVIDIVGNITFGWLTDRRCLKNYRYVCYLFAVALDGLCYLCLPML 340

  Fly   779 ITNYMGLMVMCVIFGFTFASSFSFTPSILVSIVDLDDFTCAYGLVLLVQGVGMIAGPPIAGVIYE 843
             .::..|:.....||:...:..:..|.:...||.....:.|.|:|..:..|..:..|||||.:.:
  Rat   341 -QSFPLLVPFSCTFGYFDGAYVTLIPVVTAEIVGTTSLSSALGVVYFLHAVPYLVSPPIAGWLVD 404

  Fly   844 YTGRWDDTFYYAGIFIALSGV 864
            .||.:...|...|..:..|.:
  Rat   405 TTGSYTAAFLLCGFAMIFSSI 425

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
chkNP_001163063.1 MFS 143..>315 CDD:119392 63/171 (37%)
MFS <685..869 CDD:119392 46/184 (25%)
Slc16a12NP_001178566.1 2A0111 12..451 CDD:331689 141/736 (19%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 201..221 10/121 (8%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2504
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 286 1.000 Inparanoid score I2764
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000033
OrthoInspector 1 1.000 - - mtm12325
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X70
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.860

Return to query results.
Submit another query.