DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab2 and Rab26

DIOPT Version :9

Sequence 1:NP_001260732.1 Gene:Rab2 / 35577 FlyBaseID:FBgn0014009 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_001097658.1 Gene:Rab26 / 40359 FlyBaseID:FBgn0086913 Length:410 Species:Drosophila melanogaster


Alignment Length:179 Identity:82/179 - (45%)
Similarity:130/179 - (72%) Gaps:6/179 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 KYIIIGDTGVGKSCLLLQFTDKRFQPVHDL-TIGVEFGARMITIDGKQIKLQIWDTAGQEAFRSI 71
            |.|::||:||||:.||::|.|.|:.|.:.| |:|::|..:::.:||.::|||||||||||.|||:
  Fly   214 KVIMLGDSGVGKTSLLIRFRDGRYVPSYFLSTVGIDFRNKVVVVDGTRVKLQIWDTAGQERFRSV 278

  Fly    72 TRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD-SRREVKKEEGE 135
            |.:|||.|...||:||:|.:.|::::..||.:.|:::..::||:|||||:|.. |.|:||:|:||
  Fly   279 THAYYRDAHALLLLYDVTNKTTYDNIRAWLGEIREYAQEDVVIVLIGNKADCSGSERQVKREDGE 343

  Fly   136 AFAREHGLVFMETSARTAANVEEAFINTAKEI----YEKIQEGVFDINN 180
            ...|||.:.||||||:|..|||.:|...|:::    ||...:|.|::::
  Fly   344 RLGREHNVPFMETSAKTGLNVELSFTAVARQLKSRGYEHGDDGKFNVHD 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab2NP_001260732.1 PLN03108 1..213 CDD:178655 82/179 (46%)
Rab26NP_001097658.1 Rab26 214..407 CDD:206695 82/179 (46%)
RAB 214..378 CDD:197555 78/163 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454206
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

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