DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Rab2 and Rab21

DIOPT Version :10

Sequence 1:NP_477090.1 Gene:Rab2 / 35577 FlyBaseID:FBgn0014009 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_001036321.2 Gene:Rab21 / 3355163 FlyBaseID:FBgn0039966 Length:222 Species:Drosophila melanogaster


Alignment Length:216 Identity:72/216 - (33%)
Similarity:124/216 - (57%) Gaps:18/216 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQEAFRS 70
            ||.:::|:..|||:.|:|::.:.||...|..|:...|.:|.::: ||::.:|.||||||||.|.:
  Fly    14 FKAVLLGEGCVGKTSLVLRYMEDRFNAQHLSTLQASFVSRKMSLEDGRRAQLNIWDTAGQERFHA 78

  Fly    71 ITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDSRREVKKEEGE 135
            :...||||:.|||||||||.|::|..:.:|:.:.||...:.:.::::|||:||:.:|.|..:|..
  Fly    79 LGPIYYRGSDGALLVYDITDRDSFQKVKSWVRELRQMRGTEIALIIVGNKTDLEEQRAVTHDEAL 143

  Fly   136 AFAREHGLVFMETSARTAANVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGQQHSPTNPSL-- 198
            .:||..|..::||||:....|.|.|....:.:.|::.:.    ..:|:.:::   .:|...:|  
  Fly   144 QYARTVGAQYVETSAKENEGVAELFELLTQLMLEQLSQR----QPDASPLRL---QNPDTDNLNN 201

  Fly   199 ------PGAGGAAGAANSGCC 213
                  |..|..||  ...||
  Fly   202 SDDSEAPDPGDPAG--QRSCC 220

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab2NP_477090.1 PLN03108 1..213 CDD:178655 70/214 (33%)
Rab21NP_001036321.2 Rab21 14..176 CDD:133323 62/161 (39%)

Return to query results.
Submit another query.