DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab2 and Rab40

DIOPT Version :10

Sequence 1:NP_477090.1 Gene:Rab2 / 35577 FlyBaseID:FBgn0014009 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_727611.1 Gene:Rab40 / 32195 FlyBaseID:FBgn0030391 Length:265 Species:Drosophila melanogaster


Alignment Length:171 Identity:59/171 - (34%)
Similarity:97/171 - (56%) Gaps:9/171 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 YAYLFKYIIIGDTGVGKSCLLLQF----TDKRFQPVHDLTI----GVEFGARMITIDGKQIKLQI 59
            |.||.|.:::||:.|||..:|...    |:..|...:|.|.    .|.:....|.::||::|||:
  Fly     8 YDYLLKVLLVGDSDVGKHEILSNLEDPSTESPFCSGNDCTSHILQTVAYKTTTILLEGKRVKLQL 72

  Fly    60 WDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD 124
            |||:||..|.:|.|||.|||.|.:||||||.:.:|:.:..||::..:|: ..:..:|:||:..|.
  Fly    73 WDTSGQGRFCTIIRSYSRGAQGIILVYDITNKWSFDGIDRWLKEVDEHA-PGIPKVLVGNRLHLA 136

  Fly   125 SRREVKKEEGEAFAREHGLVFMETSARTAANVEEAFINTAK 165
            .:|:|..::.|.:|..:.:...|.|.....|:.|:|...|:
  Fly   137 FKRQVAAKQAETYASRNNMSCFEISPLCNFNIRESFCELAR 177

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab2NP_477090.1 PLN03108 1..213 CDD:178655 59/171 (35%)
Rab40NP_727611.1 P-loop containing Nucleoside Triphosphate Hydrolases 6..265 CDD:476819 59/171 (35%)
SOCS 192..234 CDD:470605
Blue background indicates that the domain is not in the aligned region.

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