DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rab2 and unc-108

DIOPT Version :9

Sequence 1:NP_001260732.1 Gene:Rab2 / 35577 FlyBaseID:FBgn0014009 Length:213 Species:Drosophila melanogaster
Sequence 2:NP_001343725.1 Gene:unc-108 / 171956 WormBaseID:WBGene00006833 Length:223 Species:Caenorhabditis elegans


Alignment Length:214 Identity:189/214 - (88%)
Similarity:202/214 - (94%) Gaps:1/214 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ 65
            |||||||||||||||||||||||||||||||||||||||||||||||:|||||||||||||||||
 Worm    10 MSYAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQ 74

  Fly    66 EAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDSRREVK 130
            |:||||||||||||||||||||||||:||||||:||||||||||||||||||||||||::|||||
 Worm    75 ESFRSITRSYYRGAAGALLVYDITRRDTFNHLTSWLEDARQHSNSNMVIMLIGNKSDLEARREVK 139

  Fly   131 KEEGEAFAREHGLVFMETSARTAANVEEAFINTAKEIYEKIQEGVFDINNEANGIKIGQQHSPTN 195
            :|||||||||||||||||||:||||||||||:||||||.|||||||||||||||||:|.||||::
 Worm   140 REEGEAFAREHGLVFMETSAKTAANVEEAFIDTAKEIYRKIQEGVFDINNEANGIKLGPQHSPSS 204

  Fly   196 PSLPGAGGAAG-AANSGCC 213
            |:.||.....| ...||||
 Worm   205 PNSPGGNATGGLGGGSGCC 223

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Rab2NP_001260732.1 PLN03108 1..213 CDD:178655 187/212 (88%)
unc-108NP_001343725.1 Ras 10..202 CDD:331851 179/191 (94%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160159298
Domainoid 1 1.000 311 1.000 Domainoid score I716
eggNOG 1 0.900 - - E2759_KOG0098
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H20628
Inparanoid 1 1.050 387 1.000 Inparanoid score I1156
Isobase 1 0.950 - 0 Normalized mean entropy S200
OMA 1 1.010 - - QHG53521
OrthoDB 1 1.010 - - D1271975at2759
OrthoFinder 1 1.000 - - FOG0002747
OrthoInspector 1 1.000 - - oto20715
orthoMCL 1 0.900 - - OOG6_101535
Panther 1 1.100 - - LDO PTHR47979
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3432
SonicParanoid 1 1.000 - - X1831
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1615.790

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