DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Tdc1 and bas-1

DIOPT Version :9

Sequence 1:NP_610226.2 Gene:Tdc1 / 35573 FlyBaseID:FBgn0259977 Length:587 Species:Drosophila melanogaster
Sequence 2:NP_001021151.1 Gene:bas-1 / 175778 WormBaseID:WBGene00000239 Length:523 Species:Caenorhabditis elegans


Alignment Length:525 Identity:179/525 - (34%)
Similarity:276/525 - (52%) Gaps:56/525 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDVEEFRKYGKEVIDYICQYGTNIEERDVAPTLDPGYLKKLLPADAPQSPEPFKDVLEDFEQKIM 65
            ||.::.|..||:::|::..|...|.:|...|.:.|||:..|:||.||.:||.:..:.:|.|..::
 Worm     1 MDSQKLRTEGKKMLDFVADYWDGIRDRKPLPDVKPGYINDLVPAQAPATPEDWAKIFDDLENVVV 65

  Fly    66 PGVVHWNHPKFFAYFPSGNSFPSVLGDMLSSAIGSIGFSWASCPAAAELETIVMNWYAKALGLPK 130
            .|..||:||.||||||:..|:.|::.|:||..|..|||:|.|||:..|||...::|....:|||:
 Worm    66 NGATHWHHPHFFAYFPTALSYQSIMADILSGGIAGIGFTWKSCPSMTELEMSSLDWVVDLMGLPE 130

  Fly   131 AFVSDAPGSTGGGALQGSASECVLVSLITARARAISELK---------GQTSV------------ 174
            .|.:...| .|.|.:|.:||:..:::::.|||..:..:|         .:|.|            
 Worm   131 HFKNSHNG-PGCGIIQSTASDSTMIAIMAARATHVERIKSEPTFMKWVSETGVGKTLKNIFDRVK 194

  Fly   175 -------------------------HDSVFLPSLIAYASREAHSSVEKATKMALVKLRIIDA--- 211
                                     ||.......:.|.|.:|||||||...::.|::|.:.|   
 Worm   195 VNKTLVARASVTVDDEASGMITPYFHDPTVFERFVMYCSDQAHSSVEKGAMLSAVRMRKLKATRG 259

  Fly   212 --DEHGRMRVDLLRQAIQNDVNAGLTPFFVVATVGTTGGCAFDDITEIGKVCRQVSSIWLHVDGA 274
              ..:|..| :.|:.||:.|...|..||..:||||||..|..|.:.|:|.||.: ..::||||.|
 Worm   260 FLGNYGVSR-ETLQNAIKEDRARGYIPFMFLATVGTTCSCGVDQVDELGPVCVE-EGLYLHVDAA 322

  Fly   275 YAGNSFILPEMRVFSAGLEYADSFNTNPNKLLLTNFDASALWVRDVMNLKSALNVNPLYLRHEH- 338
            |||...:..|.:....|:|:.||||.|.:|..:.|||.|.:|.::..::....||:.:||.||: 
 Worm   323 YAGTFALCEEFKYLIRGMEHVDSFNFNLHKAGMVNFDCSPMWFKNGTHVSRYFNVDAVYLAHEYQ 387

  Fly   339 LTGVDYRHYGIPLSRRFRALKLWFVFRTYGIRGLQEYIRNHMALAKKFEMLVRKDERFEVRNDVH 403
            .|..||||..:.|.||||:||:|||.|..|:..::||:|....||.:|..|:.::.:||.....|
 Worm   388 TTASDYRHLQVALGRRFRSLKIWFVLRNMGVDKIREYLRRTELLAAEFSKLILENGKFEHFVPQH 452

  Fly   404 LGLVCFRMRTG-DEPNHMLLAQINHSGKMHMTPAKFNGRYVIRFCVTYEHATEKDILEAWTQIKC 467
            |||.|||::.. :..|..|...||...::|:.|:..:|.|.:|..|..:..|..||:.|...|..
 Worm   453 LGLTCFRLKNSTNADNEKLCNAINDDRRIHLVPSTVHGTYFLRMVVCSQLTTLDDIIYARDVIFE 517

  Fly   468 FAEEI 472
            .||::
 Worm   518 LAEKL 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tdc1NP_610226.2 Pyridoxal_deC 35..412 CDD:278699 152/428 (36%)
bas-1NP_001021151.1 AAT_I 35..461 CDD:302748 152/428 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0.815392 Normalized mean entropy S2516
OMA 1 1.010 - - QHG57772
OrthoDB 1 1.010 - - D223497at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.880

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