DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Trap1 and CR88

DIOPT Version :9

Sequence 1:NP_001260726.1 Gene:Trap1 / 35559 FlyBaseID:FBgn0026761 Length:691 Species:Drosophila melanogaster
Sequence 2:NP_178487.1 Gene:CR88 / 814930 AraportID:AT2G04030 Length:780 Species:Arabidopsis thaliana


Alignment Length:689 Identity:240/689 - (34%)
Similarity:363/689 - (52%) Gaps:96/689 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 TKQASGSVVDKHEFQAETRQLLDIVARSLYSDHEVFVRELISNASDALEKFRYTSLSAGGENLAG 119
            |::.||   :|.|:|||..:|||::..||||..|||:|||:|||||||:|.|:  ||....:|.|
plant    71 TEEGSG---EKFEYQAEVSRLLDLIVHSLYSHKEVFLRELVSNASDALDKLRF--LSVTEPSLLG 130

  Fly   120 KDRPLEIRITTDKPLMQLIIQDTGIGMTKEELVSNLGTIARSGSKKFLEQMKGTQQGASSEASSN 184
            ....|||||..|.....:.|.|||||||||||:..|||||:||:.|||:.:|   :.....|.:.
plant   131 DGGDLEIRIKPDPDNGTITITDTGIGMTKEELIDCLGTIAQSGTSKFLKALK---ENKDLGADNG 192

  Fly   185 IIGQFGVGFYSSFIVANKVEVFTRAAVPNAPGLRWSTDGSGTYEIEEVPD----VELGTRIVLHL 245
            :||||||||||:|:||.||.|.|::...:...:..|...|.:|.|.|..|    :..||:|.|:|
plant   193 LIGQFGVGFYSAFLVAEKVVVSTKSPKSDKQYVWESVADSSSYLIREETDPDNILRRGTQITLYL 257

  Fly   246 KTDCR-EYADEERIKAVIKKYSNFVGSPI-----------------LLNGKQ------------- 279
            :.|.: |:|:..|||.::|.||.|||.||                 :..|::             
plant   258 REDDKYEFAESTRIKNLVKNYSQFVGFPIYTWQEKSRTIEVEEDEPVKEGEEGEPKKKKTTKTEK 322

  Fly   280 ------ANEIKPLWLLEPQSISKEQHHDFYRFISNSFDVPRFTLHYNADVPLSIHALLYFPEGKP 338
                  |||.||||:...:.:.|.::::||:...|.|..|....|:..:..:...::||.    |
plant   323 YWDWELANETKPLWMRNSKEVEKGEYNEFYKKAFNEFLDPLAHTHFTTEGEVEFRSILYI----P 383

  Fly   339 GLFEMSRDGNT-----GVALYTRKVLIQSKTE-HLLPKWLRFVKGVVDSEDIPLNLSRELLQNSS 397
            |:..::.:..|     .:.||.::|.|....: .|.|::|.||||||||:|:|||:|||:||.|.
plant   384 GMGPLNNEDVTNPKTKNIRLYVKRVFISDDFDGELFPRYLSFVKGVVDSDDLPLNVSREILQESR 448

  Fly   398 LIRKLSSVISTRVIRFLQERSKKQ-PEEYEAFYRDYGLFLKEGIVTSSDASEKEEIAKLLRFESS 461
            ::|.:...:..:....:||.|:.: .|:|:.|:.::|.|||.|.:  .|....:.|..||||.||
plant   449 IVRIMRKRLIRKTFDMIQEISESENKEDYKKFWENFGRFLKLGCI--EDTGNHKRITPLLRFFSS 511

  Fly   462 KSETASGRMSLEEYYNAVPAEQQNIYYLAAPNRVLAESSPYYESLKKRNELVLFCYEPYDELVLM 526
            |:|  ....||::|...:...|:.|||||..:...|:|:|:.|.|.:::..||:..||.||:.:.
plant   512 KNE--EELTSLDDYIENMGENQKAIYYLATDSLKSAKSAPFLEKLIQKDIEVLYLVEPIDEVAIQ 574

  Fly   527 QLGKFKSKKLVSVEKEMRE-----ESKETTATTDFGEGSLLRSELDTLIPWLEEELRGQVIKVKA 586
            .|..:|.||.|.:.||..|     |.|:..|          :.|.:.|..|::::|..:|.||:.
plant   575 NLQTYKEKKFVDISKEDLELGDEDEVKDREA----------KQEFNLLCDWIKQQLGDKVAKVQV 629

  Fly   587 TTRLDTHPCVI---------TVEEMAAARHFIRTQSHQVPEQNRFALLQPELEINPKHPIIKKLN 642
            :.||.:.|||:         .:|.:..|:....|.|.:.....|.      |||||.|||||.||
plant   630 SNRLSSSPCVLVSGKFGWSANMERLMKAQALGDTSSLEFMRGRRI------LEINPDHPIIKDLN 688

  Fly   643 KLRES--DKDLAQLIAKQLFANAMVGAGLAEDPRMLLTN 679
            ...::  :...|..:...|:..|::.:|...|....|.|
plant   689 AACKNAPESTEATRVVDLLYDTAIISSGFTPDSPAELGN 727

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Trap1NP_001260726.1 PRK05218 65..689 CDD:235366 237/679 (35%)
HATPase_c 91..246 CDD:280651 73/158 (46%)
HSP90 251..688 CDD:278607 147/488 (30%)
CR88NP_178487.1 PRK05218 77..738 CDD:235366 237/680 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0326
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D924636at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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