DRSC/TRiP Functional Genomics Resources

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Protein Alignment tomboy40 and Tomm40

DIOPT Version :9

Sequence 1:NP_610213.1 Gene:tomboy40 / 35553 FlyBaseID:FBgn0033074 Length:340 Species:Drosophila melanogaster
Sequence 2:NP_997685.1 Gene:Tomm40 / 308416 RGDID:1303022 Length:361 Species:Rattus norvegicus


Alignment Length:374 Identity:165/374 - (44%)
Similarity:217/374 - (58%) Gaps:47/374 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGNVMASTADAESSRGRGHLSAGLRLPEAPQYSGGVPPQM------------------------- 40
            ||||:|:::.          .||...|..|...|..||..                         
  Rat     1 MGNVLAASSP----------PAGPPPPPTPSLVGLPPPPPSPPGFTLPPLGGGLGTGSNAGRGSE 55

  Fly    41 ----VEALKAEAKKPE-----LTNPGTLEELHSRCRDIQANTFEGAKIMVNKGLSNHFQVTHTIN 96
                ..|..|.|...:     |.||||.||.|.:|:::.....||.|:.|||||||.||||||:.
  Rat    56 RTPGAAASGAAASSNDGNCGCLPNPGTFEECHRKCKELFPVQMEGVKLTVNKGLSNRFQVTHTVA 120

  Fly    97 MNSAGPSGYRFGATYVGTKQYGPTEAFPVLLGEIDPMGNLNANVIHQLTSRLRCKFASQFQDSKL 161
            :.:.|.|.|.||.|||||||..||||||||:|::|..|:|||.|||||:..||.|.|.|.|.||.
  Rat   121 LGTIGESNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLSPGLRSKMAIQTQQSKF 185

  Fly   162 VGTQLTGDYRGRDYTLTLTMGNPGFFTSSGVFVCQYLQSVTKRLALGSEFAYHYGPNVPGRQVAV 226
            |..|:.|:|||.|:|..:|:|||.....||:.|..||||:|..||||.|..||   ..||.:..|
  Rat   186 VNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVYH---RRPGEKGTV 247

  Fly   227 LSAVGRYAFGDTVWSCTLGPAGFHLSYYQKASDQLQIGVEVETNIRQQESTATVAYQIDLPKADL 291
            :|..|:|...:.:.:.|||.||.|.:||.|||||||:|||.|.:.|.|:::|:..||:|||||:.
  Rat   248 MSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGVEFEASTRMQDTSASFGYQLDLPKANF 312

  Fly   292 VFRGSLDSNWLISGVLEKRLQPLPFSLAISGRMNHQKNSFRLGCGLMIG 340
            :|:||::|||::...|||:|.|||.:|::...:||:||.|..|.||.||
  Rat   313 LFKGSVNSNWIVGATLEKKLPPLPLTLSLCAFLNHRKNKFLCGFGLTIG 361

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tomboy40NP_610213.1 Porin3_Tom40 53..340 CDD:132766 148/286 (52%)
Tomm40NP_997685.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..72 15/80 (19%)
Porin3_Tom40 77..361 CDD:132766 148/286 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166350293
Domainoid 1 1.000 312 1.000 Domainoid score I1262
eggNOG 1 0.900 - - E1_KOG3296
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H101105
Inparanoid 1 1.050 336 1.000 Inparanoid score I2317
OMA 1 1.010 - - QHG55758
OrthoDB 1 1.010 - - D1346842at2759
OrthoFinder 1 1.000 - - FOG0001620
OrthoInspector 1 1.000 - - mtm9030
orthoMCL 1 0.900 - - OOG6_101593
Panther 1 1.100 - - O PTHR10802
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1729
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1615.770

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