DRSC/TRiP Functional Genomics Resources

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Protein Alignment tomboy40 and tomm-40

DIOPT Version :9

Sequence 1:NP_610213.1 Gene:tomboy40 / 35553 FlyBaseID:FBgn0033074 Length:340 Species:Drosophila melanogaster
Sequence 2:NP_495912.1 Gene:tomm-40 / 174431 WormBaseID:WBGene00007686 Length:301 Species:Caenorhabditis elegans


Alignment Length:303 Identity:146/303 - (48%)
Similarity:195/303 - (64%) Gaps:4/303 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 MVEALKAEAKKP-ELTNPGTLEELHSRCRDIQANTFEGAKIMVNKGLSNHFQVTHTINMNSAGPS 103
            |....::|...| ..||||:.||||.:.||:....|||||:|||||||:||||:||::: ||..:
 Worm     1 MATPTESELASPIPQTNPGSYEELHRKARDVFPTCFEGAKLMVNKGLSSHFQVSHTLSL-SAMNT 64

  Fly   104 GYRFGATYVGTKQYGPTEAFPVLLGEIDPMGNLNANVIHQLTSRLRCKFASQFQDSKLVGTQLTG 168
            |||||||||||.|.||.||:|:|||:.|..||..|.::||| ...|.|...|.|..||.|.|.|.
 Worm    65 GYRFGATYVGTNQVGPAEAYPILLGDTDVNGNTTATILHQL-GIYRTKLQGQIQQGKLAGAQATI 128

  Fly   169 DYRGRDYTLTLTMGNPGFFTSSGVFVCQYLQSVTKRLALGSEFAYHYGPNVPGRQVAVLSAVGRY 233
            :.:||..||.||:.|......:|:.|.|:|:.:|.||.:|:|..|.||.|:||.|::|||...||
 Worm   129 ERKGRLSTLGLTLANIDLVNEAGILVGQFLRRLTPRLDVGTEMVYQYGKNIPGGQISVLSYAARY 193

  Fly   234 AFGDTVWSCTLGPAGFHLSYYQKASDQLQIGVEVETNIRQQESTATVAYQIDLPKADLVFRGSLD 298
            .....:.:.|||.:|.||:||.|.::.|..|||.|.|....|:..|:|||.:||:..:..|.|.|
 Worm   194 TANHFIAAATLGASGVHLTYYHKQNENLAFGVEFECNANVGEAVTTLAYQTELPEEGVTMRASFD 258

  Fly   299 SNWLISGVLEKRL-QPLPFSLAISGRMNHQKNSFRLGCGLMIG 340
            :||.:.||.|||| |.|||:||:||.:||.|.:.:.|.||:||
 Worm   259 TNWTVGGVFEKRLSQQLPFTLALSGTLNHVKAAGKFGIGLIIG 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
tomboy40NP_610213.1 Porin3_Tom40 53..340 CDD:132766 141/287 (49%)
tomm-40NP_495912.1 Porin3_Tom40 16..301 CDD:132766 141/286 (49%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164179
Domainoid 1 1.000 282 1.000 Domainoid score I872
eggNOG 1 0.900 - - E1_KOG3296
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H101105
Inparanoid 1 1.050 289 1.000 Inparanoid score I1698
Isobase 1 0.950 - 0 Normalized mean entropy S1946
OMA 1 1.010 - - QHG55758
OrthoDB 1 1.010 - - D1346842at2759
OrthoFinder 1 1.000 - - FOG0001620
OrthoInspector 1 1.000 - - otm14473
orthoMCL 1 0.900 - - OOG6_101593
Panther 1 1.100 - - O PTHR10802
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1729
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1716.720

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