DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF3f2 and AMSH1

DIOPT Version :10

Sequence 1:NP_610210.2 Gene:eIF3f2 / 35547 FlyBaseID:FBgn0033069 Length:286 Species:Drosophila melanogaster
Sequence 2:NP_564533.1 Gene:AMSH1 / 841301 AraportID:AT1G48790 Length:507 Species:Arabidopsis thaliana


Alignment Length:155 Identity:33/155 - (21%)
Similarity:62/155 - (40%) Gaps:27/155 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SMRAKVYLKPLVFFQIIDAYDRRPKGDN----QVMGTLLGRNKEGHIEITNCFTVPHKEHSENKR 67
            |:|::..|:..:...::|.:.|..|.:.    :..|.|.|..|.....|| ...:|.:|.:.   
plant   324 SLRSESPLELHIATSMMDTFMRLAKSNTKKNLETCGILAGSLKNRKFYIT-ALIIPKQESTS--- 384

  Fly    68 IDLDMAYAS---EVLEL--NMFAYPNERVLGWFCT--GKSVSRSASLIHDYYVRECCEGQPLHLL 125
               |...|:   |:.|:  ....:|    |||..|  .:|...|:..:|.:|..:....:.:   
plant   385 ---DSCQATNEEEIFEVQDKQSLFP----LGWIHTHPTQSCFMSSIDVHTHYSYQIMLPEAV--- 439

  Fly   126 VDAALKNQRLSTRLYCAVEMGVPGG 150
              |.:...:.|:|.:....:..|||
plant   440 --AIVMAPQDSSRNHGIFRLTTPGG 462

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF3f2NP_610210.2 MPN_eIF3f 12..280 CDD:163695 31/150 (21%)
AMSH1NP_564533.1 USP8_dimer 1..104 CDD:462647
MPN_AMSH_like 333..507 CDD:163697 30/146 (21%)
Blue background indicates that the domain is not in the aligned region.

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