DRSC/TRiP Functional Genomics Resources

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Protein Alignment eIF3f2 and cops6

DIOPT Version :9

Sequence 1:NP_610210.2 Gene:eIF3f2 / 35547 FlyBaseID:FBgn0033069 Length:286 Species:Drosophila melanogaster
Sequence 2:NP_001265456.1 Gene:cops6 / 448375 XenbaseID:XB-GENE-947827 Length:319 Species:Xenopus tropicalis


Alignment Length:280 Identity:64/280 - (22%)
Similarity:125/280 - (44%) Gaps:19/280 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MMSRNFSMRAKVYLKPLVFFQIIDAYDR------RPKGDNQVMGTLLGRNKEGHIEITNCFTVPH 59
            :|::..:....|.|.|||...|.|.:.|      ||.   ||:|.|:|:.:..:||:.|.|.:..
 Frog    22 VMAQGVTGSVTVALHPLVILNISDHWIRMRSQEGRPV---QVIGALIGKQEGRNIEVMNSFELLS 83

  Fly    60 KEHSENKRIDLDMAYASEVLELNMFAYPNERVLGWFCTGKSVSRSASLIHDYYVRECCE--GQPL 122
            :.:.|...|:.:..|..|  |.....:.:...|||:.||.:...|...:|    ::.||  ..||
 Frog    84 QINEEKITINKEYYYTKE--EQFKQVFKDMEFLGWYTTGGTPDPSDIHVH----KQVCEIIESPL 142

  Fly   123 HLLVDAALKNQRLSTRLYCAVEMGVPGGTKGLMFSLVPLEISNENSDLVALRCIEKQSQQQASKQ 187
            .|.::...|:..|...:|.:| :.:..|...::.:.:...::.|.::.:.:..:.:.: ...|.:
 Frog   143 FLKLNPMTKHTDLPVSVYESV-IDIVNGEATMLLAELSYTLATEEAERIGVDHVARMT-ATGSGE 205

  Fly   188 MERFVPELAQVVDATRDMQHRLDLVLRYINDVLARKKKPDNVVGRSLYAALTAVPLLDSDKFRVM 252
            .......|.....|.:.:..|:.|:|.|:....|.:...::.:.|...|....:|:|.:|||::.
 Frog   206 NSTVAEHLIAQHSAIKMLHSRVRLILEYVRAAEAGEVPFNHEILREASALCHCLPVLSTDKFKMD 270

  Fly   253 FNTNLRDMLMAITLSTMIKT 272
            |.....|:.:...|.|:.||
 Frog   271 FYDQCNDVGLMSYLGTITKT 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
eIF3f2NP_610210.2 MPN_eIF3f 12..280 CDD:163695 63/269 (23%)
cops6NP_001265456.1 MPN_CSN6 31..313 CDD:163694 63/271 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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