DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Ptr and ptr-4

DIOPT Version :9

Sequence 1:NP_001246145.1 Gene:Ptr / 35546 FlyBaseID:FBgn0262867 Length:1169 Species:Drosophila melanogaster
Sequence 2:NP_509013.2 Gene:ptr-4 / 180876 WormBaseID:WBGene00004219 Length:960 Species:Caenorhabditis elegans


Alignment Length:974 Identity:240/974 - (24%)
Similarity:400/974 - (41%) Gaps:176/974 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 LNKSFYHLGICIAKHPGYFIIIPVLLTLLCMTGYQQLKYQIDPEYLFSPIAGEGKTERAIVEQYF 76
            :.|.|:..||.:|||..:|:|:|:.||:|.:.|...|:..:|...||.|      |:..:..::.
 Worm    14 MQKVFFKYGIFVAKHQFWFLIVPLALTVLSIPGLFYLQINLDLYRLFVP------TDAPVRYEFE 72

  Fly    77 KVNYTHRFNVGRITRPGRFGRVIVITKDG--------------------DENMI----------- 110
            :....:..:.|.::...:..|.....:||                    ||..:           
 Worm    73 RTKDFNSLSQGDLSLTPKRNRREFDCEDGSCFLPDVEMDRLKRDLQALEDEARLDVPFGNASSMA 137

  Fly   111 --RREVFQEL-----------------------RQLDNIIQNATTTYDGDTYTYKDNCARWENEC 150
              :|:|.::.                       |:.||::|   :.|.|..:.:..:..:..|| 
 Worm   138 RYKRDVNKDKEKKERERKLIPAKHDILRFYVVHRKFDNLLQ---SKYLGPLFQFTQDMMKVTNE- 198

  Fly   151 FENDILNLD--ALMDDIEA---GQLNLTFPFMFNPVTWDAHLFPVFFGGTKLTEDNYVISVPAIQ 210
            ||:::..|:  ...|...|   ..|||          |..|...:|..|......|..:|.|.:.
 Worm   199 FEDEVWGLEDFCTKDPGSASCNNNLNL----------WIKHADVLFKDGKIKANPNLQLSYPVLY 253

  Fly   211 L----------VYFVTADTKRQDAKGA-----EWEETFLRVVGNAENSGQF-------------- 246
            |          :|.|....::.:.:||     .|   |:.....|||:..:              
 Worm   254 LFNRPKDIGNVIYGVDVKGEKNEIQGARVLTIHW---FVNYPATAENNRAYYAYRQKLNEYWESI 315

  Fly   247 -KHISVSYFA--SRTLDHELEKNTKTVVPYFSSTFLLMGLFSIITCMMGDAVRSKPFLGLMGNVS 308
             ::|.:.:..  .:.:|.|:.:..||.||:.....:|:.:|.:......|..:|||....:|...
 Worm   316 SENIDLQFIPHNDKAMDDEMLEIIKTTVPFAFPATILLTIFVLSANYSSDRTKSKPIEMCVGVWC 380

  Fly   309 AIMATLAAFGLAMYCGIEFIGINLAAPFLMIGIGIDDTFVMLAGWRRTKAKMPVAERMGLMMSEA 373
            .|.|.:..||:..:.|.:|..:....|||::.:|:||.|:|:|.||....|...|.|:|.:|::|
 Worm   381 VIFALIITFGVFFFFGAKFNPVTSTMPFLVLAVGVDDDFLMMAAWRECDRKHSPAIRLGFVMADA 445

  Fly   374 AVSITITSVTDFISFLIG-IISPFRSVRIFCTYSVFAVCFTFLWHITFFAACMAISGYRERKNLH 437
            ..|||:||.|:|..|.:| .:....:|..||..:...|.|.:|..|||:||.:..||.||...  
 Worm   446 GASITVTSFTNFFCFFLGWFMCSTPAVADFCIITAAGVFFDYLMQITFYAAILKYSGDREETG-- 508

  Fly   438 SIFGC----------------RVQPMSVAIKEKRNFLYKAIMAGGIDANDPDNPIDNKDHMLMAF 486
            .:..|                ..:..|.|.|||..         .||....:..:|..  .:..|
 Worm   509 GLASCCYKKNDDDDEDVETQREQREQSEAAKEKEE---------NIDFAHHEKTLDLP--YMHQF 562

  Fly   487 FKDKMAAVINNKWCKAIIILAFASYLVGACYGITQIKEGLERRKLSREDSYSVEFFDREDDYYRE 551
            |:|..|..:..||.:...:..|..|...|.||.:.::..:...|..|::|....|....|.|...
 Worm   563 FRDTFAPFVMKKWVRVASLALFPIYTAFAIYGCSILRVDISPVKYIRDNSPIQTFVALADKYIWA 627

  Fly   552 FPYRMQVIIAGPLNYSDPLVQEQVENLTSTLEHTSYVTSRRYTESWLRSFLSFLERNNEL--LNV 614
            ........|..|.:..|...:.::..|...||.|.|...|..|..|:..:..:|   |:.  :|.
 Worm   628 DNVMPNFHIMSPPDLRDEGARNRLNELVYKLESTKYSIGRVSTNLWVWQYQQYL---NDFPHINY 689

  Fly   615 TVDDEQTFIDAVKEHWLFPGNPFSLDVRFNEDETQII-----------ASRFLIQAVNITDTNHE 668
            |.|    |.|.......|.    .||.....|:.:|:           |..|......:...:..
 Worm   690 TSD----FYDRKNLREFFS----QLDYSQYRDKVKILDNVTNGEPCISAFSFQTSFYGLDSWDKR 746

  Fly   669 KEMVRDLRQICKDSP----LNASIFHPYFVFFDQFELVRPVSLQAMVIGAIIMMIISFVFIPNIL 729
            :..:...|.|.|:.|    ..:.||.|:.:  ||...:.|.|:|.:.....:|.:|||.|:|:..
 Worm   747 QSELFYWRDILKEFPEFDMFLSGIFSPFLI--DQRHTIAPSSMQTIGSALAMMALISFFFLPDAQ 809

  Fly   730 CSLWVAFSVISIELGVAGYMALWDVNLDSISMINLIMCIGFSVDFTAHICYTYMSSKKRSPKARV 794
            ....:.||::||.:||.|.:||...:|||:||..::|.||.:||::.||||.|..|:.::.:.:|
 Worm   810 SVFLMTFSLLSISMGVCGGLALLGSDLDSVSMGCIVMAIGLAVDYSVHICYRYHRSEYKTAQEKV 874

  Fly   795 REALHSLGLPIIQGSSSTILGIVALLLAQSYIFLVFFKMVFLVIFFGAMHGLFLLPVLLSLFGP 858
            .:.|.|:|.|:.|...||::|:...:...:|:..|||:.|:||...|..|.|..||.|:|...|
 Worm   875 ADTLASVGWPVTQAVCSTLVGLAITVFVPAYLVRVFFQTVYLVNIIGLFHALVWLPQLISALDP 938

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PtrNP_001246145.1 Patched 53..845 CDD:280598 218/918 (24%)
Sterol-sensing 295..442 CDD:289145 51/147 (35%)
ptr-4NP_509013.2 Patched 137..938 CDD:355433 213/843 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1934
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D210960at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10796
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.880

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