DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment EcR and NR1H4

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001193922.1 Gene:NR1H4 / 9971 HGNCID:7967 Length:486 Species:Homo sapiens


Alignment Length:414 Identity:152/414 - (36%)
Similarity:218/414 - (52%) Gaps:58/414 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   249 KKSKKG-PAPRVQ-EELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMY 311
            ||.:.| .|.|:: :|||:||||||||||||||||||||||||||:||:|||.||.|..|.||||
Human   120 KKPRMGASAGRIKGDELCVVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYKCKNGGNCVMDMY 184

  Fly   312 MRRKCQECRLKKCLAVGMRPEC----VVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLAS 372
            ||||||||||:||..:||..||    ::.|.||..||..|..::..|:.....|.          
Human   185 MRRKCQECRLRKCKEMGMLAECMYTGLLTEIQCKSKRLRKNVKQHADQTVNEDSE---------- 239

  Fly   373 GGGQDFVKKEILDLMTCEPPQHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGY--E 435
              |:| :::......:|                     |....||.:|..:::   :..|.|  :
Human   240 --GRD-LRQVTSTTKSC---------------------REKTELTPDQQTLLH---FIMDSYNKQ 277

  Fly   436 QPSEEDLRRIMSQPDENESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACS 500
            :..:|...:|:.:    |...:.:|..:||:....||::|||.|.||.|..:..||||.|||..:
Human   278 RMPQEITNKILKE----EFSAEENFLILTEMATNHVQVLVEFTKKLPGFQTLDHEDQIALLKGSA 338

  Fly   501 SEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAGMADN-IEDLLHFCRQMFSMKVDNVEYALL 564
            .|.|.||.|..::....|    .:.....:..:.:|::|. |..:..|.:.:..:|:...|||||
Human   339 VEAMFLRSAEIFNKKLPS----GHSDLLEERIRNSGISDEYITPMFSFYKSIGELKMTQEEYALL 399

  Fly   565 TAIVIFS-DRPGLEKAQLVEAIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQN 628
            |||||.| ||..::..:.||.:|...:|.|: .:...|..::..  .:|.||..||||||..:.:
Human   400 TAIVILSPDRQYIKDREAVEKLQEPLLDVLQ-KLCKIHQPENPQ--HFACLLGRLTELRTFNHHH 461

  Fly   629 AEMCFSLKLKNRKLPKFLEEIWDV 652
            |||..|.::.:.|....|.|||||
Human   462 AEMLMSWRVNDHKFTPLLCEIWDV 485

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 64/93 (69%)
NR_LBD_EcR 420..652 CDD:132736 73/235 (31%)
NR1H4NP_001193922.1 NR_DBD_FXR 134..221 CDD:143520 61/86 (71%)
NR_LBD_Fxr 261..481 CDD:132734 70/233 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 126 1.000 Domainoid score I5437
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1137281at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24082
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
44.020

Return to query results.
Submit another query.