DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment EcR and Thra

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_112396.2 Gene:Thra / 81812 RGDID:3857 Length:492 Species:Rattus norvegicus


Alignment Length:531 Identity:139/531 - (26%)
Similarity:216/531 - (40%) Gaps:123/531 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   243 NESCDAKKSKKGPAPRV--QEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKS--AVYCCKFG 303
            |..|..|.|..|..|..  ::|.|:||||:|:||||..:|||||||||||::.|:  ..|.||:.
  Rat    30 NGQCPLKSSMSGYIPSYLDKDEQCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYD 94

  Fly   304 RACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRR---EKKAQKEKDKMTTS------ 359
            ..|.:|...|.:||.||.|||:||||..:.|:.:::...||:   :.:.::.|::|..|      
  Rat    95 SCCVIDKITRNQCQLCRFKKCIAVGMAMDLVLDDSKRVAKRKLIEQNRERRRKEEMIRSLQQRPE 159

  Fly   360 PSSQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIPLLPDEILAKCQARNIPSLTYNQLAVI 424
            |:                   .|..||:......|.:         ...|..:            
  Rat   160 PT-------------------PEEWDLIHVATEAHRS---------TNAQGSH------------ 184

  Fly   425 YKLIWYQDGYEQPSEEDLRRIMSQPDENESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQ 489
                |.|.....|.:.....|:|.||.::...: :|...|:|....:..:|:|||.||.|:::|.
  Rat   185 ----WKQRRKFLPDDIGQSPIVSMPDGDKVDLE-AFSEFTKIITPAITRVVDFAKKLPMFSELPC 244

  Fly   490 EDQITLLKACSSEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSM 554
            ||||.|||.|..|:|.||.|.|||..||::..:...:..|:..|..|:....:.:....:.:.:.
  Rat   245 EDQIILLKGCCMEIMSLRAAVRYDPESDTLTLSGEMAVKREQLKNGGLGVVSDAIFELGKSLSAF 309

  Fly   555 KVDNVEYALLTAIVIFS-DRPGLEKAQLVEAIQSYYIDTLRIYILNR-----HCGDSMSLVFYAK 613
            .:|:.|.|||.|:::.| ||.||.....:|..|..|:.....|:.:|     |        |:.|
  Rat   310 NLDDTEVALLQAVLLMSTDRSGLLCVDKIEKSQEAYLLAFEHYVNHRKHNIPH--------FWPK 366

  Fly   614 LLSILTELRTLGNQNAEMCFSLKLKNRKLPKFLEEIWDVHAIPPSVQSHLQITQEENERLERAER 678
            ||.          :..|:..|:..|.............||   |..|..|.:...:..::.:.|:
  Rat   367 LLM----------KEREVQSSILYKGAAAEGRPGGSLGVH---PEGQQLLGMHVVQGPQVRQLEQ 418

  Fly   679 MRASVGGAITAGIDCDSASTSAAAAAAQHQPQPQPQ------------------------PQPSS 719
            .....|              |......|||....||                        .:.||
  Rat   419 QFGEAG--------------SLRGPVLQHQSPKSPQQRLLELLHRSGILHSRAVCGEDDSSEASS 469

  Fly   720 LTQNDSQHQTQ 730
            |:.:.|...|:
  Rat   470 LSSSSSDEDTE 480

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 43/94 (46%)
NR_LBD_EcR 420..652 CDD:132736 63/237 (27%)
ThraNP_112396.2 Modulating 1..52 6/21 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..33 1/2 (50%)
NR_DBD_TR 52..138 CDD:143519 42/85 (49%)
NR_LBD_TR 162..370 CDD:132733 65/251 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 457..492 5/24 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351542
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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