DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment EcR and RORC

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:XP_006711547.2 Gene:RORC / 6097 HGNCID:10260 Length:651 Species:Homo sapiens


Alignment Length:729 Identity:172/729 - (23%)
Similarity:275/729 - (37%) Gaps:220/729 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    63 GGSNGHGLSQQQQSVITLAMHGCSSTLPAQTTIIPINGNANGNGGSTNGQYVPGATNLGALANGM 127
            |.|..|..|.........|.|...|:||  ..::|....:.|:...|.|.               
Human    16 GHSASHSFSLPAGGPGAPAFHPPPSSLP--WALLPALLGSQGSQDGTKGA--------------- 63

  Fly   128 LNGGFNGMQQQIQNGHGLINSTTPSTPTTPLHLQQNLGGAGGGGIGGMGILH--HANGTPN---- 186
              ..:.|..:.....||.:..|.||              ||...:.|....|  ..:|||:    
Human    64 --APWTGPHRDSTEPHGRMWGTGPS--------------AGKDRMSGRPWPHPWSKSGTPSEQDR 112

  Fly   187 ---GLIGVVGGGGGV------GLGVGGGGVGGLGMQHTPRSDSVNSISSGRDDLSPSSSLNGYSA 242
               ||:....|||..      ..|..|||..|                                 
Human   113 RATGLVSCEHGGGKFEGQSHQAPGPPGGGRTG--------------------------------- 144

  Fly   243 NESC-DAKKSKKGPAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRAC 306
               | :...:||....:::...|.:|||::||.||..:||||||||||||...:|.|.|...:.|
Human   145 ---CLELLAAKKTHTSQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQRCNAAYSCTRQQNC 206

  Fly   307 EMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRR------------EKKAQKEKDKMTTS 359
            .:|...|.:||.|||:||||:||..: .|...:.:.|:|            :::.|:::..:.|.
Human   207 PIDRTSRNRCQHCRLQKCLALGMSRD-AVKFGRMSKKQRDSLHAEVQKQLQQRQQQQQEPVVKTP 270

  Fly   360 PSSQHGG----------NGSL--------------------ASGGGQDF---VKKEILDLMTCE- 390
            |:...|.          :|.|                    |||.|..:   :.|..|:..:|. 
Human   271 PAGAQGADTLTYTLGLPDGQLPLGSSPDLPEASACPPGLLKASGSGPSYSNNLAKAGLNGASCHL 335

  Fly   391 --PPQHATI-----------PLLPDEILAKC-------------------------QARNIPSLT 417
              .|:....           .|.||    :|                         ..|:.|...
Human   336 EYSPERGKAEGRESFYSTGSQLTPD----RCGLRFEEHRHPGLGELGQGPDSYGSPSFRSTPEAP 396

  Fly   418 YNQLAVIYKLIW-----YQDGYEQPSEEDLRR---IMSQPD----ENESQTDVSFR---HITEIT 467
            |..|..|..|:.     |::..:...|:.||:   |.|:.:    :.:|..::..|   |:||  
Human   397 YASLTEIEHLVQSVCKSYRETCQLRLEDLLRQRSNIFSREEVTGYQRKSMWEMWERCAHHLTE-- 459

  Fly   468 ILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHSSDSIFFANNRSYTRDSY 532
              .:|.:|||||.|..|.::.|.|||.||||.:.||:::||.|.|:..:.::|| ..:....:.:
Human   460 --AIQYVVEFAKRLSGFMELCQNDQIVLLKAGAMEVVLVRMCRAYNADNRTVFF-EGKYGGMELF 521

  Fly   533 KMAGMADNIEDLLHFCRQMFSMKVDNVEYALLTAIVIF-SDRPGLEKAQLVEAIQSYYIDTLRIY 596
            :..|.::.|..:..|...:.::.....|.||.||:|:. :.||||::.:.||.:|.         
Human   522 RALGCSELISSIFDFSHSLSALHFSEDEIALYTALVLINAHRPGLQEKRKVEQLQY--------- 577

  Fly   597 ILNRHCGDSMSLVFYAKLL-----SILTELRTLGNQNAEMCFSLKLKNRKLPKFLEEIWDVHAIP 656
                    ::.|.|:..|.     |||.:|...|...: :| |..::..::.:.|..|....|.|
Human   578 --------NLELAFHHHLCKTHRQSILAKLPPKGKLRS-LC-SQHVERLQIFQHLHPIVVQAAFP 632

  Fly   657 PSVQSHLQITQEEN 670
            | :...|..|:.|:
Human   633 P-LYKELFSTETES 645

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 40/101 (40%)
NR_LBD_EcR 420..652 CDD:132736 66/252 (26%)
RORCXP_006711547.2 NR_DBD_ROR 157..251 CDD:143526 40/94 (43%)
NR_LBD_ROR_like 401..639 CDD:132737 68/262 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165157565
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

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