DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment EcR and Nr1h4

DIOPT Version :10

Sequence 1:NP_724460.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001426556.1 Gene:Nr1h4 / 60351 RGDID:628831 Length:487 Species:Rattus norvegicus


Alignment Length:410 Identity:153/410 - (37%)
Similarity:215/410 - (52%) Gaps:65/410 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   256 APRVQ-EELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQEC 319
            |.|:: :|||:||||||||||||||||||||||||||:||:|||.||.|..|.||||||||||:|
  Rat   129 AGRIKGDELCVVCGDRASGYHYNALTCEGCKGFFRRSITKNAVYKCKNGGNCVMDMYMRRKCQDC 193

  Fly   320 RLKKCLAVGMRPEC----VVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVK 380
            ||:||..:||..||    ::.|.||..||..|..::..|:.....|.            |:|   
  Rat   194 RLRKCREMGMLAECMYTGLLTEIQCKSKRLRKNVKQHADQTVNEDSE------------GRD--- 243

  Fly   381 KEILDLMTCEPPQHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGY--EQPSEEDLR 443
               |..:|      :|..|        |:.:.  .||.:|..:   |.:..|.|  ::..:|...
  Rat   244 ---LRQVT------STTKL--------CREKT--ELTVDQQTL---LDYIMDSYSKQRMPQEITN 286

  Fly   444 RIMSQPDENESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRM 508
            :|:.:    |...:.:|..:||:....||::|||.|.||.|..:..||||.|||..:.|.|.||.
  Rat   287 KILKE----EFSAEENFLILTEMATSHVQILVEFTKRLPGFQTLDHEDQIALLKGSAVEAMFLRS 347

  Fly   509 ARRYDHSSDSIFFANNRSYTRDSYKMAGMADN-IEDLLHFCRQMFSMKVDNVEYALLTAIVIFS- 571
            |..::....    |.:.....:..:.:|::|. |..:..|.:.:..:|:...||||||||||.| 
  Rat   348 AEIFNKKLP----AGHADLLEERIRKSGISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSP 408

  Fly   572 DRPGLEKAQLVEAIQSYYIDTL----RIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQNAEMC 632
            ||..::..:.||.:|...:|.|    :||       ...:...:|.||..||||||..:.:|||.
  Rat   409 DRQYIKDREAVEKLQEPLLDVLQKLCKIY-------QPENPQHFACLLGRLTELRTFNHHHAEML 466

  Fly   633 FSLKLKNRKLPKFLEEIWDV 652
            .|.::.:.|....|.|||||
  Rat   467 MSWRVNDHKFTPLLCEIWDV 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_724460.1 NR_DBD_EcR 261..351 CDD:143535 63/93 (68%)
NR_LBD_EcR 420..652 CDD:132736 75/239 (31%)
Nr1h4NP_001426556.1 None

Return to query results.
Submit another query.