DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment EcR and RARA

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:XP_005257609.1 Gene:RARA / 5914 HGNCID:9864 Length:478 Species:Homo sapiens


Alignment Length:531 Identity:139/531 - (26%)
Similarity:226/531 - (42%) Gaps:129/531 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   201 GVGGGGVGGLGMQHTPRS---------DSVNSISSGRDDLSPSSSLNGYSANESCDAKKSKKGPA 256
            |..|.|.||    ..||:         .::.:.||..:::.||               .....|.
Human    52 GSAGQGAGG----RAPRAGWRAGDVTGSAIETQSSSSEEIVPS---------------PPSPPPL 97

  Fly   257 PRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRL 321
            ||:.:. |.||.|::|||||....|||||||||||:.|:.||.|...:.|.::...|.:||.|||
Human    98 PRIYKP-CFVCQDKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRL 161

  Fly   322 KKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDL 386
            :||..|||..|.|  .|....|::|....:..:..|.:|                     |:.:|
Human   162 QKCFEVGMSKESV--RNDRNKKKKEVPKPECSESYTLTP---------------------EVGEL 203

  Fly   387 MTCEPPQHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPDE 451
            :               |.:.|......|:|.             |.|....:....:|:....|.
Human   204 I---------------EKVRKAHQETFPALC-------------QLGKYTTNNSSEQRVSLDIDL 240

  Fly   452 NESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHSS 516
            .:..:::|    |:..|.|    |||||.||.||.:...||||||||...::::||:..||....
Human   241 WDKFSELS----TKCIIKT----VEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQ 297

  Fly   517 DSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSMKVDNVEYALLTAI-VIFSDRPGLEKAQ 580
            |::.|::..:..|.....||.....:.:..|..|:..:::|:.|..||:|| :|..||..||:..
Human   298 DTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPD 362

  Fly   581 LVEAIQSYYIDTLRIYILNR-----HCGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKNR 640
            .|:.:|...::.|::|:..|     |        .:.|:|..:|:||::..:.||...:||:   
Human   363 RVDMLQEPLLEALKVYVRKRRPSRPH--------MFPKMLMKITDLRSISAKGAERVITLKM--- 416

  Fly   641 KLPKFLEEIWDVHAIPPSVQSHLQITQEENERLERAERM-----RASVGGAITAGIDCDSASTSA 700
            ::|         .::||.:|          |.||.:|.:     :...||....|:.....|.|.
Human   417 EIP---------GSMPPLIQ----------EMLENSEGLDTLSGQPGGGGRDGGGLAPPPGSCSP 462

  Fly   701 AAAAAQHQPQP 711
            :.:.:.::..|
Human   463 SLSPSSNRSSP 473

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 41/89 (46%)
NR_LBD_EcR 420..652 CDD:132736 63/237 (27%)
RARAXP_005257609.1 NR_DBD_RAR 98..182 CDD:143522 41/86 (48%)
NR_LBD_RAR 202..432 CDD:132735 73/295 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165157579
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.840

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