Protein Alignment EcR and rorcb

DIOPT Version :9

• Sequence 1: NP_001163061.1
• Gene: EcR / 35540
• FlyBaseID: FBgn0000546
• Length: 878
• Species: Drosophila melanogaster
• Sequence 2: NP_001264023.1
• Gene: rorcb / 562258
• ZFINID: ZDB-GENE-040724-215
• Length: 480
• Species: Danio rerio
• Alignment Length: 455
• Identity: 119/455 - (26%)
• Similarity: 203/455 - (44%)
• Gaps: 102/455 - (22%)

  Fly   258 RVQEEL--CLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECR 320
            |.|.|:  |.:|||::||.||..:||||||||||||...:|:|.|...|.|.:|...|.:||.||
Zfish     2 RAQIEVIPCKICGDKSSGIHYGVITCEGCKGFFRRSQQNNAMYSCSRQRNCLIDRTNRNRCQHCR 66

  Fly   321 LKKCLAVGMRPECV----VPENQ-----CAMKRREKKAQ-------------------------- 350
            |:||||:||..:.|    :.:.|     ..::|.::.:|
Zfish    67 LQKCLALGMSRDAVKFGRMSKKQRDSLYAEVQRHQQLSQDCLAGLTGRDEAEDGAHSRPYSSGGS 131

  Fly   351 ----KEKDKMTTSP-------------------------SSQHGGNGSLASGGGQDFVKKEILDL 386
                .:.|.:.|.|                         .:..||:||.:|...|...:...:||
Zfish   132 SSTLSDLDDIATLPDGLLFDLPLTPEEAGEYCALEMLSSGTGSGGSGSGSSSSSQSSPEPSAVDL 196

  Fly   387 MTCEPPQHATIPLLPD----------EILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEED 441
            ......:|..|  :||          .|...|...:|..:|.|.:....:...|       |.|:
Zfish   197 ADAVRVKHEYI--MPDNSRLTHSLLGSIPDNCSLHDIERITQNVVKSHLETCQY-------STEE 252

  Fly   442 LRR---IMSQPDENESQTDVSFRHITEITIL----TVQLIVEFAKGLPAFTKIPQEDQITLLKAC 499
            |::   .:..|:|..|....|...:.:...|    .:|.:|||||.:..|.::.|.|||.||||.
Zfish   253 LKKHTWSLYTPEETRSFQLKSAEWMWQQCALQITNAIQYVVEFAKRISGFMELCQNDQIILLKAG 317

  Fly   500 SSEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSMKVDNVEYALL 564
            ..||:::||.|.|:.|::::|| :.:..:...:|..|..|.:..:....:.:..:::...|.||.
Zfish   318 CLEVLLIRMCRAYNSSNNTMFF-DGKFASPQLFKALGCDDLVNAVFELAKSLSRLQLSEEEMALY 381

  Fly   565 TAIVIFS-DRPGLEKAQLVEAIQSYYIDTLRIYILNRHC--GDSMSLVFYAKLLSILTELRTLGN 626
            :|.|:.: |||.|.::|.|:.:|.      ::|:..:|.  .:..::....|::|.|.:::::.|
Zfish   382 SAAVLLAPDRPWLTESQQVQKLQE------KVYVALQHSLHMNGATIEKLDKMVSKLPQMKSICN 440

  Fly   627  626
            Zfish   441  440

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
EcR	NP_001163061.1	NR_DBD_EcR	261..351	CDD:143535	43/130 (33%)
		NR_LBD_EcR	420..652	CDD:132736	54/217 (25%)
rorcb	NP_001264023.1	NR_DBD_ROR	3..97	CDD:143526	42/93 (45%)
		NR_LBD	230..468	CDD:299703	57/225 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C170593374
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	3	2.840