DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment EcR and rarab

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:XP_005164086.1 Gene:rarab / 555364 ZFINID:ZDB-GENE-980526-72 Length:460 Species:Danio rerio


Alignment Length:574 Identity:162/574 - (28%)
Similarity:243/574 - (42%) Gaps:139/574 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   166 GAGGGGIGGMGILHHANGTPNGLIGVVGGGGGV------GLGVGGGGVGGLGMQHTPRSDSVNSI 224
            |..|..:||..:.|:....|:.|       ||:      ||.|.|        ..||...:|.:.
Zfish    12 GGLGTPLGGFPMPHYPYFFPHML-------GGLSPPALPGLPVSG--------YSTPSPATVETQ 61

  Fly   225 SSGRDDLSPSSSLNGYSANESCDAKKSKKGPAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFR 289
            |:..:::.||               .....|.|||.:. |.||.|::|||||....|||||||||
Zfish    62 STSSEEIVPS---------------PPSPPPPPRVYKP-CFVCQDKSSGYHYGVSACEGCKGFFR 110

  Fly   290 RSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKD 354
            ||:.|:.||.|...::|.::...|.:||.|||:|||.|||..|.|         |.::..:|:.|
Zfish   111 RSIQKNMVYTCHREKSCIINKVTRNRCQYCRLQKCLEVGMSKESV---------RNDRNKRKKDD 166

  Fly   355 KMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIPLLPDEILAKCQARNIPSLTYN 419
            |                        |:|.|:.....|.....|     |.:.|......|||.  
Zfish   167 K------------------------KQECLENYVLSPDTEKMI-----EQVRKAHQETFPSLC-- 200

  Fly   420 QLAVIYKLIWYQDGYEQPSEEDLRRIMSQPDENESQTDVSFRHITEITILTVQLIVEFAKGLPAF 484
            ||.          .|...:..| .|:....|..:..:::|    |:..|.|    |||||.||.|
Zfish   201 QLG----------KYTTNNSAD-HRVALDVDLWDKFSELS----TKCIIKT----VEFAKQLPGF 246

  Fly   485 TKIPQEDQITLLKACSSEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCR 549
            |.:...||||||||...::::||:..||....|::.|::..:..|.....||.....:.:..|..
Zfish   247 TTLTIADQITLLKAACLDILILRICTRYTPDQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAN 311

  Fly   550 QMFSMKVDNVEYALLTAI-VIFSDRPGLEKAQLVEAIQSYYIDTLRIYILNR-----HCGDSMSL 608
            |:..:::|:.|..||:|| ::..||..||::..|:.:|...::.|:||:.||     |       
Zfish   312 QLLPLEMDDAETGLLSAICLLCGDRQDLEQSDKVDELQEPLLEALKIYVRNRRPHKPH------- 369

  Fly   609 VFYAKLLSILTELRTLGNQNAEMCFSLKLKNRKLPKFLEEIWDVHAIPPSVQSHLQITQEENERL 673
             .:.|:|..:|:||::..:.||...:||:   ::|         .::||.:|..|    |.:|.|
Zfish   370 -MFPKMLMKITDLRSISAKGAERVITLKM---EIP---------GSMPPLIQEML----ENSEGL 417

  Fly   674 ERAERMRASVGGAITAGIDCDSASTSAAAAAAQHQPQPQPQPQPSSLTQNDSQH 727
            |......|..||....|......|.|             |...|||...:.|.|
Zfish   418 EGGGSKGAGGGGGGGGGKGAPPGSCS-------------PSLSPSSAHSSPSAH 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 40/89 (45%)
NR_LBD_EcR 420..652 CDD:132736 66/237 (28%)
rarabXP_005164086.1 NR_DBD_RAR 80..155 CDD:143522 40/75 (53%)
NR_LBD_RAR 184..413 CDD:132735 76/278 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593372
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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