DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment EcR and rorab

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:XP_017212349.1 Gene:rorab / 554722 ZFINID:ZDB-GENE-040426-855 Length:545 Species:Danio rerio


Alignment Length:539 Identity:137/539 - (25%)
Similarity:224/539 - (41%) Gaps:123/539 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 PRSDSVNSISSGRD-----DLSPSSSLNGYSANESC-----DAKKSKKGPAPRVQEELCLVCGDR 270
            ||..:..:.:|..|     |..|.:........:||     |....||....:::...|.:|||:
Zfish    11 PRKSASEAGASVEDSPVKPDSKPETDKPAPVRRQSCSSTNKDVSSGKKTHTSQIESIPCKICGDK 75

  Fly   271 ASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVV 335
            :||.||..:||||||||||||...:..|.|...::|.:|...|.:||.|||:|||||||..: .|
Zfish    76 SSGIHYGVITCEGCKGFFRRSQQGTVSYSCPRQKSCLIDRTSRNRCQHCRLQKCLAVGMSRD-AV 139

  Fly   336 PENQCAMKRR-------EKKAQKEKDKMT------------------TSPS-------------- 361
            ...:.:.|:|       :|..|:::|..|                  .:||              
Zfish   140 KFGRMSKKQRDSLFAEVQKHRQQQQDDKTGDESEKNQESQAPGEAEPLTPSYALSSSGVTEIPDD 204

  Fly   362 --------SQHGGNGSLASGG--------------GQDFVKKEI---------LDLMTC-----E 390
                    :|..|....|.||              ..|.:|.|.         ||...|     .
Zfish   205 LSGYVNGQTQEEGKADSAIGGFYLDIQPSPDQSGLDMDGIKLEPVCDLSSDSGLDQYCCYSNGDA 269

  Fly   391 PPQHATIPLLPDEI----LAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPDE 451
            .|.|..:..|.:.|    |..||.........|...|:...:   :.|::.|:||:.::.:.   
Zfish   270 SPPHDDLEHLSENICKSHLETCQYLREELQPSNWQTVLQSNL---EAYQKKSQEDMWQLCAV--- 328

  Fly   452 NESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHSS 516
                      .:||    .||.:|||||.:..|.::.|.|||.||||.|.||:.:||.|.|:..:
Zfish   329 ----------KVTE----AVQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFVRMCRAYNSQN 379

  Fly   517 DSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSMKVDNVEYALLTAIVIFS-DRPGLEKAQ 580
            :::|| :::....:.:|..|..|.|..:..|.:.:.|:::...|..|.:|.|:.| ||..|::..
Zfish   380 NTVFF-DSKYAGPEVFKALGCDDLISSVFEFAKSLNSLQLSEDEIGLFSAYVLMSADRSWLQEKT 443

  Fly   581 LVEAIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLK-----LKNR 640
            .||.:|    ..::|.:.|....:........||:..::.:|.|..::.|...:.:     :.:.
Zfish   444 RVEKLQ----QKIKIALQNLLQKNKRDEGILTKLVCKVSTVRMLCRRHMEKLSAFRALYPEMVHT 504

  Fly   641 KLPKFLEEIW--DVHAIPP 657
            :.|...:|::  |...|.|
Zfish   505 RFPPLYKELFGSDFEQILP 523

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 41/96 (43%)
NR_LBD_EcR 420..652 CDD:132736 58/239 (24%)
rorabXP_017212349.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170593379
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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