DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment EcR and Rora

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:XP_038938751.1 Gene:Rora / 300807 RGDID:1308419 Length:523 Species:Rattus norvegicus


Alignment Length:498 Identity:130/498 - (26%)
Similarity:213/498 - (42%) Gaps:90/498 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   205 GGVGGLGMQHTPRSDSVNSISSGRDDLSPSSSLNGYSANESCDAKKSKKGPAPRVQEELCLVCGD 269
            |.....|.:.||.:.     .:||...:|.:......|:.|.....:||....:::...|.:|||
  Rat    19 GSEAAAGSRETPLTQ-----DAGRKSEAPGAGRRQSYASSSRGISVTKKTHTSQIEIIPCKICGD 78

  Fly   270 RASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECV 334
            ::||.||..:||||||||||||...:|.|.|...:.|.:|...|.:||.|||:|||||||..:.|
  Rat    79 KSSGIHYGVITCEGCKGFFRRSQQSNATYSCPRQKNCLIDRTSRNRCQHCRLQKCLAVGMSRDAV 143

  Fly   335 ----------------VPENQCAMKRREKKAQK-EKDKMTTSPSSQHGG------------NGSL 370
                            |.:::...::|:.:.|. |.:.:|.:.:....|            :|..
  Rat   144 KFGRMSKKQRDSLYAEVQKHRMQQQQRDHQQQPGEAEPLTPTYNISANGLTELHDDLSTYMDGHT 208

  Fly   371 ASGGGQD-FVKKEILDLMTCEPPQHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGY 434
            ..|...| .|....||:..........|..:..|          |...|...:..:....:.:|.
  Rat   209 PEGSKADSAVSSFYLDIQPSPDQSGLDINGIKPE----------PICDYTPASGFFPYCSFTNGE 263

  Fly   435 EQPS------------------------EEDLRRI-----MSQPDEN--ESQTDVSFR----HIT 464
            ..|:                        .|:|::|     :.:..||  ..|.:|.::    .||
  Rat   264 TSPTVSMAELEHLAQNISKSHLETCQYLREELQQITWQTFLQEEIENYQNKQREVMWQLCAIKIT 328

  Fly   465 EITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHSSDSIFFANNRSYTR 529
            |    .:|.:|||||.:..|.::.|.|||.||||.|.||:.:||.|.:|..:::::| :.:..:.
  Rat   329 E----AIQYVVEFAKRIDGFMELCQNDQIVLLKAGSLEVVFIRMCRAFDSQNNTVYF-DGKYASP 388

  Fly   530 DSYKMAGMADNIEDLLHFCRQMFSMKVDNVEYALLTAIVIFS-DRPGLEKAQLVEAIQSYYIDTL 593
            |.:|..|..|.|..:..|.:.:.||.:...|.||.:|.|:.| ||..|::...:|.:|......|
  Rat   389 DVFKSLGCEDFISFVFEFGKSLCSMHLTEDEIALFSAFVLMSADRSWLQEKVKIEKLQQKIQLAL 453

  Fly   594 RIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLK 636
            :..:...|..|.:    ..||:..::.||.|..::.|...:.|
  Rat   454 QHVLQKNHREDGI----LTKLICKVSTLRALCGRHTEKLMAFK 492

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 41/105 (39%)
NR_LBD_EcR 420..652 CDD:132736 64/253 (25%)
RoraXP_038938751.1 NR_DBD_ROR 66..160 CDD:143526 39/93 (42%)
NR_LBD_ROR_like 272..511 CDD:132737 62/230 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351566
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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