DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment EcR and Ppard

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_037273.2 Gene:Ppard / 25682 RGDID:3370 Length:440 Species:Rattus norvegicus


Alignment Length:473 Identity:141/473 - (29%)
Similarity:211/473 - (44%) Gaps:75/473 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   198 VGLGVGGGGVGGLGMQHTPRSDSVNSISSGRDDLSPSSSLNGYSANESCDAKKSKKGPAPRVQEE 262
            |..|.|...:.| |.:||..|.|...:|   .:.||||.|:  .....||   ...|.:..::  
  Rat    19 VATGDGAPELNG-GPEHTLPSSSCTDLS---QNSSPSSLLD--QLQMGCD---GASGGSLNME-- 72

  Fly   263 LCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAV 327
             |.||||:|||:||....||||||||||::.....| .|..|.|::....|.|||.||.:||||:
  Rat    73 -CRVCGDKASGFHYGVHACEGCKGFFRRTIRMKLKY-EKCDRICKIQKKNRNKCQYCRFQKCLAL 135

  Fly   328 GMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPP 392
            ||....:         |..:..:.||.|:..         |..||.|.|.  ..::.||....  
  Rat   136 GMSHNAI---------RFGRMPEAEKRKLVA---------GLTASEGCQQ--NPQLADLKAFS-- 178

  Fly   393 QHATIPLLPDEILAKCQARNIPSLT----YNQLAVIYK----------LIWYQDGYEQPSEEDLR 443
            :|.....|.:..:.|.:||:|  ||    :|...:|:.          |:|.|            
  Rat   179 KHIYNAYLKNFNMTKKKARSI--LTGKSSHNAPFIIHDIETLWQAEKGLVWKQ------------ 229

  Fly   444 RIMSQPDENESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRM 508
            .:...|..||....|.:| ....|:.||:.:.||||.:|.|:.:...||:||||....|.:...:
  Rat   230 LVNGPPPYNEISVHVFYR-CQSTTVETVRELTEFAKNIPNFSSLFLNDQVTLLKYGVHEAIFAML 293

  Fly   509 ARRYDHSSDSIFFANNRSYTRDSYKMA---GMADNIEDLLHFCRQMFSMKVDNVEYAL-LTAIVI 569
            |...  :.|.:..||...:....:..:   ..:|.||....|..:..::::|:.:.|| :.||::
  Rat   294 ASIV--NKDGLLVANGSGFVTHEFLRSIRKPFSDIIEPKFEFAVKFNALELDDSDLALFIAAIIL 356

  Fly   570 FSDRPGLEKAQLVEAIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQNAEMCFS 634
            ..|||||.....|||||...:..|..::...| .||..|  :.|||..:.:||.|..::|:|...
  Rat   357 CGDRPGLMNVPQVEAIQDTILQALEFHLQVNH-PDSQYL--FPKLLQKMADLRQLVTEHAQMMQW 418

  Fly   635 LKLKNRK--LPKFLEEIW 650
            ||....:  |...|:||:
  Rat   419 LKKTESETLLHPLLQEIY 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 37/89 (42%)
NR_LBD_EcR 420..652 CDD:132736 67/247 (27%)
PpardNP_037273.2 NR_DBD_Ppar 72..155 CDD:143523 39/95 (41%)
NR_LBD_PPAR 172..439 CDD:132730 78/287 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351562
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.