DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment EcR and Rara

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:XP_017452499.1 Gene:Rara / 24705 RGDID:3534 Length:462 Species:Rattus norvegicus


Alignment Length:584 Identity:151/584 - (25%)
Similarity:241/584 - (41%) Gaps:143/584 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   147 NSTTPSTPTTPLHLQQNLGGAGGGGIGGMGILHHANGTPNGLIGVVGGGGGVGLGVGGGGVGGLG 211
            ||::..||             |||.:.|..:..:|...|..|.|:...|....|           
  Rat     4 NSSSCPTP-------------GGGHLNGYPVPPYAFFFPPMLGGLSPPGALTSL----------- 44

  Fly   212 MQH--------TPRSDSVNSISSGRDDLSPSSSLNGYSANESCDAKKSKKGPAPRVQEELCLVCG 268
             ||        ||...::.:.||..:::.||               .....|.||:.:. |.||.
  Rat    45 -QHQLPVSGYSTPSPATIETQSSSSEEIVPS---------------PPSPPPLPRIYKP-CFVCQ 92

  Fly   269 DRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPEC 333
            |::|||||....|||||||||||:.|:.||.|...:.|.::...|.:||.|||:||..|||..|.
  Rat    93 DKSSGYHYGVSACEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKES 157

  Fly   334 VVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIP 398
            |  .|....|::|....:..:..|.:|                     |:.:|:           
  Rat   158 V--RNDRNKKKKETPKPECSESYTLTP---------------------EVGELI----------- 188

  Fly   399 LLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPDENESQTDVSFRHI 463
                |.:.|......|:|.             |.|....:....:|:....|..:..:::|    
  Rat   189 ----EKVRKAHQETFPALC-------------QLGKYTTNNSSEQRVSLDIDLWDKFSELS---- 232

  Fly   464 TEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHSSDSIFFANNRSYT 528
            |:..|.|    |||||.||.||.:...||||||||...::::||:..||....|::.|::..:..
  Rat   233 TKCIIKT----VEFAKQLPGFTTLTIADQITLLKAACLDILILRICTRYTPEQDTMTFSDGLTLN 293

  Fly   529 RDSYKMAGMADNIEDLLHFCRQMFSMKVDNVEYALLTAI-VIFSDRPGLEKAQLVEAIQSYYIDT 592
            |.....||.....:.:..|..|:..:::|:.|..||:|| :|..||..||:...|:.:|...::.
  Rat   294 RTQMHNAGFGPLTDLVFAFANQLLPLEMDDAETGLLSAICLICGDRQDLEQPDKVDMLQEPLLEA 358

  Fly   593 LRIYILNR-----HCGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKNRKLPKFLEEIWDV 652
            |::|:..|     |        .:.|:|..:|:||::..:.||...:||:   ::|         
  Rat   359 LKVYVRKRRPSRPH--------MFPKMLMKITDLRSISAKGAERVITLKM---EIP--------- 403

  Fly   653 HAIPPSVQSHLQITQEENERLERAERMRASVGGAIT--AGIDCDSASTSAAAAAAQHQPQPQPQ 714
            .::||.:|..|       |..|..:.:....||...  .|:.....|.|.:.:.:.|:..|..|
  Rat   404 GSMPPLIQEML-------ENSEGLDTLSGQSGGGTRDGGGLAPPPGSCSPSLSPSSHRSSPATQ 460

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 41/89 (46%)
NR_LBD_EcR 420..652 CDD:132736 63/237 (27%)
RaraXP_017452499.1 NR_DBD_RAR 82..166 CDD:143522 41/86 (48%)
NR_LBD_RAR 186..416 CDD:132735 72/292 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166351564
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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