DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and Nr1h4

DIOPT Version :10

Sequence 1:NP_724460.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001157172.1 Gene:Nr1h4 / 20186 MGIID:1352464 Length:488 Species:Mus musculus


Alignment Length:445 Identity:157/445 - (35%)
Similarity:221/445 - (49%) Gaps:66/445 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 SSGRDDLSPSSSLNGYSANESCDAKKSKKGP------APRVQ-EELCLVCGDRASGYHYNALTCE 282
            |.|..:|....:..||............|.|      |.|:: :|||:|||||||||||||||||
Mouse    92 SPGIYELRRMPAETGYQGETEVSEMPVTKKPRMAAASAGRIKGDELCVVCGDRASGYHYNALTCE 156

  Fly   283 GCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPEC----VVPENQCAMK 343
            |||||||||:||:|||.||.|..|.||||||||||||||:||..:||..||    ::.|.||..|
Mouse   157 GCKGFFRRSITKNAVYKCKNGGNCVMDMYMRRKCQECRLRKCKEMGMLAECMYTGLLTEIQCKSK 221

  Fly   344 RREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIPLLPDEILAKC 408
            |..|..::..|:......|:           |:| :::.......|                   
Mouse   222 RLRKNVKQHADQTANEDDSE-----------GRD-LRQVTSTTKFC------------------- 255

  Fly   409 QARNIPSLTYNQLAVIYKLIWYQDGY--EQPSEEDLRRIMSQPDENESQTDVSFRHITEITILTV 471
              |....||.:|..:   |.:..|.|  ::..:|...:|:.:    |...:.:|..:||:....|
Mouse   256 --REKTELTADQQTL---LDYIMDSYNKQRMPQEITNKILKE----EFSAEENFLILTEMATSHV 311

  Fly   472 QLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAG 536
            |::|||.|.||.|..:..||||.|||..:.|.|.||.|..::....    |.:.....:..:.:|
Mouse   312 QILVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP----AGHADLLEERIRKSG 372

  Fly   537 MADN-IEDLLHFCRQMFSMKVDNVEYALLTAIVIFS-DRPGLEKAQLVEAIQSYYIDTLRIYILN 599
            ::|. |..:..|.:.:..:|:...||||||||||.| ||..::..:.||.:|...:|     :|.
Mouse   373 ISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD-----VLQ 432

  Fly   600 RHCG--DSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKNRKLPKFLEEIWDV 652
            :.|.  ...:...:|.||..||||||..:.:|||..|.::.:.|....|.|||||
Mouse   433 KLCKMYQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDV 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_724460.1 NR_DBD_EcR 261..351 CDD:143535 64/93 (69%)
NR_LBD_EcR 420..652 CDD:132736 74/237 (31%)
Nr1h4NP_001157172.1 NR_DBD_FXR 135..222 CDD:143520 61/86 (71%)
NR_LBD_Fxr 264..483 CDD:132734 71/234 (30%)

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