DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and Nr1h4

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001157172.1 Gene:Nr1h4 / 20186 MGIID:1352464 Length:488 Species:Mus musculus


Alignment Length:445 Identity:157/445 - (35%)
Similarity:221/445 - (49%) Gaps:66/445 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 SSGRDDLSPSSSLNGYSANESCDAKKSKKGP------APRVQ-EELCLVCGDRASGYHYNALTCE 282
            |.|..:|....:..||............|.|      |.|:: :|||:|||||||||||||||||
Mouse    92 SPGIYELRRMPAETGYQGETEVSEMPVTKKPRMAAASAGRIKGDELCVVCGDRASGYHYNALTCE 156

  Fly   283 GCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPEC----VVPENQCAMK 343
            |||||||||:||:|||.||.|..|.||||||||||||||:||..:||..||    ::.|.||..|
Mouse   157 GCKGFFRRSITKNAVYKCKNGGNCVMDMYMRRKCQECRLRKCKEMGMLAECMYTGLLTEIQCKSK 221

  Fly   344 RREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPPQHATIPLLPDEILAKC 408
            |..|..::..|:......|:           |:| :::.......|                   
Mouse   222 RLRKNVKQHADQTANEDDSE-----------GRD-LRQVTSTTKFC------------------- 255

  Fly   409 QARNIPSLTYNQLAVIYKLIWYQDGY--EQPSEEDLRRIMSQPDENESQTDVSFRHITEITILTV 471
              |....||.:|..:   |.:..|.|  ::..:|...:|:.:    |...:.:|..:||:....|
Mouse   256 --REKTELTADQQTL---LDYIMDSYNKQRMPQEITNKILKE----EFSAEENFLILTEMATSHV 311

  Fly   472 QLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLRMARRYDHSSDSIFFANNRSYTRDSYKMAG 536
            |::|||.|.||.|..:..||||.|||..:.|.|.||.|..::....    |.:.....:..:.:|
Mouse   312 QILVEFTKKLPGFQTLDHEDQIALLKGSAVEAMFLRSAEIFNKKLP----AGHADLLEERIRKSG 372

  Fly   537 MADN-IEDLLHFCRQMFSMKVDNVEYALLTAIVIFS-DRPGLEKAQLVEAIQSYYIDTLRIYILN 599
            ::|. |..:..|.:.:..:|:...||||||||||.| ||..::..:.||.:|...:|     :|.
Mouse   373 ISDEYITPMFSFYKSVGELKMTQEEYALLTAIVILSPDRQYIKDREAVEKLQEPLLD-----VLQ 432

  Fly   600 RHCG--DSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKNRKLPKFLEEIWDV 652
            :.|.  ...:...:|.||..||||||..:.:|||..|.::.:.|....|.|||||
Mouse   433 KLCKMYQPENPQHFACLLGRLTELRTFNHHHAEMLMSWRVNDHKFTPLLCEIWDV 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 64/93 (69%)
NR_LBD_EcR 420..652 CDD:132736 74/237 (31%)
Nr1h4NP_001157172.1 NR_DBD_FXR 135..222 CDD:143520 61/86 (71%)
NR_LBD_Fxr 264..483 CDD:132734 71/234 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 133 1.000 Domainoid score I5038
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1137281at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR24082
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
55.020

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