DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and unc-55

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001122482.2 Gene:unc-55 / 192082 WormBaseID:WBGene00006790 Length:370 Species:Caenorhabditis elegans


Alignment Length:462 Identity:101/462 - (21%)
Similarity:175/462 - (37%) Gaps:139/462 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   228 RDDLSPSSSLNGYSANESCDAKKSKKGPAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSV 292
            :|..|.::||    .|.|.||..             |:||||::||.||...:|||||.||:||:
 Worm     2 QDGSSGAASL----GNSSPDATD-------------CVVCGDKSSGKHYGQFSCEGCKSFFKRSI 49

  Fly   293 TKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMT 357
            .:|..|.|:..:.|.:|:..|.:||.|||.||:.:|||                |:.::..:..|
 Worm    50 RRSLSYTCRATKNCAIDVQHRNQCQYCRLTKCIRMGMR----------------KEGRRSNETQT 98

  Fly   358 TSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPPQ---HATIPLLPDEILAKCQARNIPSLTYN 419
            ...:.|.|               :..:.:.:..||.   .:..|.:              |:.:|
 Worm    99 AVSAVQRG---------------RLPVTMPSLFPPNMFLRSPFPFM--------------SVPFN 134

  Fly   420 QLAVIYKLIWYQDGYEQPSEEDLRRIMSQPDENESQTDVSFRHITEITILTVQLIVEFAKGLPAF 484
            .|                    :....::|...||        |.|....|:...|.:|:  .:.
 Worm   135 PL--------------------MTAQFTKPSIKES--------IFEFAAQTIFATVNWAR--TSM 169

  Fly   485 TKIPQEDQITLLKACSSEVMMLRMAR-------------------RYDHSSDSIFFANNRSYTRD 530
            :.:.:.||:.||:...:.:.:..:|:                   ..::.|.|:     .|.:.|
 Worm   170 SNLVKGDQLILLRHSWTPIFIFALAQSNFALNLSTHLTAVTATAASTENGSSSL-----GSKSED 229

  Fly   531 SYKMAGMADNIEDLLHFCRQMFSMKVDN--------VEYALLTAIVIFS-DRPGLEKAQLVEAIQ 586
            ..|.....:.:.|...|  |.|..|:|.        ||.:.|.|:::|| |...||:...:|.| 
 Worm   230 EEKSEEKPERVFDEPQF--QGFQAKIDKIRDFHLDVVESSSLRAVLLFSCDEEALEEKGKIEEI- 291

  Fly   587 SYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTELRTLGN-QNAEMCFSLKLKNRKLPKFLEEIW 650
               ::.|:..: :.:|..:.....|.::...|..|::..| ..:.:.||..|....|...|.   
 Worm   292 ---VEKLKSAV-DEYCKMNKRSERYHQICECLQLLKSTRNLPISRLFFSRLLGTTPLETILS--- 349

  Fly   651 DVHAIPP 657
            |:...||
 Worm   350 DLLITPP 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 35/89 (39%)
NR_LBD_EcR 420..652 CDD:132736 47/260 (18%)
unc-55NP_001122482.2 NR_DBD_COUP_TF 21..89 CDD:143516 34/83 (41%)
NR_LBD_F2 148..325 CDD:132728 39/198 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165474
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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