DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment EcR and nhr-238

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_503461.1 Gene:nhr-238 / 189971 WormBaseID:WBGene00021611 Length:333 Species:Caenorhabditis elegans


Alignment Length:383 Identity:85/383 - (22%)
Similarity:136/383 - (35%) Gaps:124/383 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 CLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEM-DMYMRRKCQECRLKKCLAV 327
            |.||...|..:|:.|:.||.|..||||.|::|..........|:: :..:|:.|..||.:|||.:
 Worm     8 CGVCEHSADVFHFGAICCEACAAFFRRLVSRSKTPTAICSGNCDLRNKIIRKLCSSCRYQKCLQI 72

  Fly   328 GMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPP 392
            ||:...|             |::|:|    ||.|                  :|.||:.:     
 Worm    73 GMKESLV-------------KSKKQK----TSSS------------------EKTILEEL----- 97

  Fly   393 QHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPDENESQTD 457
                                  :..|..|.                  |||:   :...|:....
 Worm    98 ----------------------NEAYQNLL------------------DLRK---ETFRNQEAKL 119

  Fly   458 VSFRHITEITILTVQLIVEFAKGLPAFTKI-PQED--QITLLKACSSEVMMLRMARRYDHSSDS- 518
            ..|..:.::..:.:.|:||..  :..|.|: |.||  |..|:|....|.|::.|:.|   |.|| 
 Worm   120 TYFEEMDDVCSVDLSLVVETL--VRTFYKMAPMEDDQQRLLVKNFLVEFMLMDMSFR---SIDSN 179

  Fly   519 -IFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSMKVDNVEYALLTAIVIFSDRPGLEKAQLV 582
             |..||.               |..|:.:......|.|:.:.|.....|.:.......:.::|||
 Worm   180 VIILANG---------------NYVDVKNLDEHFQSTKIVSDESKAAEAKLYLKSYWEMAESQLV 229

  Fly   583 EAIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKNR 640
            ...|...:|.      |.|       :....||.....|.....:::|:|  |||::|
 Worm   230 GRFQELRVDR------NEH-------LLLCALLYWDFGLENQSEESSEIC--LKLRSR 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 27/87 (31%)
NR_LBD_EcR 420..652 CDD:132736 49/226 (22%)
nhr-238NP_503461.1 ZnF_C4 8..77 CDD:197701 25/68 (37%)
NR_LBD 123..307 CDD:132726 43/185 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165586
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.