DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-238

DIOPT Version :10

Sequence 1:NP_724460.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_503461.1 Gene:nhr-238 / 189971 WormBaseID:WBGene00021611 Length:333 Species:Caenorhabditis elegans


Alignment Length:383 Identity:85/383 - (22%)
Similarity:136/383 - (35%) Gaps:124/383 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 CLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEM-DMYMRRKCQECRLKKCLAV 327
            |.||...|..:|:.|:.||.|..||||.|::|..........|:: :..:|:.|..||.:|||.:
 Worm     8 CGVCEHSADVFHFGAICCEACAAFFRRLVSRSKTPTAICSGNCDLRNKIIRKLCSSCRYQKCLQI 72

  Fly   328 GMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEILDLMTCEPP 392
            ||:...|             |::|:|    ||.|                  :|.||:.:     
 Worm    73 GMKESLV-------------KSKKQK----TSSS------------------EKTILEEL----- 97

  Fly   393 QHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQPDENESQTD 457
                                  :..|..|.                  |||:   :...|:....
 Worm    98 ----------------------NEAYQNLL------------------DLRK---ETFRNQEAKL 119

  Fly   458 VSFRHITEITILTVQLIVEFAKGLPAFTKI-PQED--QITLLKACSSEVMMLRMARRYDHSSDS- 518
            ..|..:.::..:.:.|:||..  :..|.|: |.||  |..|:|....|.|::.|:.|   |.|| 
 Worm   120 TYFEEMDDVCSVDLSLVVETL--VRTFYKMAPMEDDQQRLLVKNFLVEFMLMDMSFR---SIDSN 179

  Fly   519 -IFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSMKVDNVEYALLTAIVIFSDRPGLEKAQLV 582
             |..||.               |..|:.:......|.|:.:.|.....|.:.......:.::|||
 Worm   180 VIILANG---------------NYVDVKNLDEHFQSTKIVSDESKAAEAKLYLKSYWEMAESQLV 229

  Fly   583 EAIQSYYIDTLRIYILNRHCGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKNR 640
            ...|...:|.      |.|       :....||.....|.....:::|:|  |||::|
 Worm   230 GRFQELRVDR------NEH-------LLLCALLYWDFGLENQSEESSEIC--LKLRSR 272

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_724460.1 NR_DBD_EcR 261..351 CDD:143535 27/87 (31%)
NR_LBD_EcR 420..652 CDD:132736 49/226 (22%)
nhr-238NP_503461.1 ZnF_C4 8..77 CDD:197701 25/68 (37%)
NR_LBD 123..307 CDD:132726 43/185 (23%)

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