DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-234

DIOPT Version :10

Sequence 1:NP_724460.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_496701.1 Gene:nhr-234 / 189663 WormBaseID:WBGene00012596 Length:357 Species:Caenorhabditis elegans


Alignment Length:447 Identity:93/447 - (20%)
Similarity:157/447 - (35%) Gaps:124/447 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   252 KKGPAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKC 316
            |:.|.|      |||||......|:.::.|..|..||||:|:....:.|::...|::...:|..|
 Worm     7 KRAPKP------CLVCGIEKGTLHFGSVVCMACASFFRRTVSFHIRFLCRYSNNCQISQDLRFIC 65

  Fly   317 QECRLKKCLAVGMRPECVVPENQCAMKRREKKAQK---EKDKMTTSPSSQHGGNGSLASGGGQDF 378
            :.||..||..||||.:.|      ..||.|.|..|   |..|                 ||..:.
 Worm    66 RSCRFDKCERVGMRRDLV------QQKRNENKLPKYVLESRK-----------------GGAGEV 107

  Fly   379 VKKEILDLMTCEP---PQHATIPLLPDE-----ILAKCQARNIPSLTYNQLAVIYKLIWYQDGYE 435
            |:..|....|.||   .:.||......|     ||         ::.::.|.|.|          
 Worm   108 VRGYITSAYTAEPRRLKEPATSSAAEPEDGFSIIL---------NMKHDDLLVYY---------- 153

  Fly   436 QPSEEDLRR---------IMSQPDENESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQED 491
               .|::|.         |:..|     |..:..:|.|:      |..::.....|....:...|
 Worm   154 ---VEEIRNSVRARQQGGIVMSP-----QNFLETKHRTD------QFALDICTMCPGTDLLENPD 204

  Fly   492 QITLLKACSSEVMMLRMARRYDHSSDSIFFANNRSYTR-------DSYKMAGMADNIEDLLHFCR 549
            ...|.|.||...:.:.::.......|.......:.||.       :.::....|           
 Worm   205 FEVLYKYCSFSSLWMDLSWINASQDDWNKVLVEKDYTEIPLITYMNQFQATVTA----------- 258

  Fly   550 QMFSMKVDNVEYALLTAIVIFSDRPGLEKAQLVEAIQSYYIDTLRIYILNRHCGDSMSLVFYAKL 614
            |:..:::|..|||.|.::.|:  :.||..:.|          ||:|.....:.|.:.:|..|.::
 Worm   259 QLARLQLDIFEYAALKSMCIW--KLGLLDSTL----------TLKIVSAEHYYGITCALSKYYRV 311

  Fly   615 LSILTELRTLGNQNAEMCFSLKLKNRKLPKFLEEIWDVHAIPPSVQSHLQITQEENE 671
            ...|.:            |.:..:..::...:..|::|:.....:..:|||.....|
 Worm   312 TKRLEQ------------FEMATRIAEITLLIGPIFNVYRDMLVLYHNLQIEDRFKE 356

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_724460.1 NR_DBD_EcR 261..351 CDD:143535 30/89 (34%)
NR_LBD_EcR 420..652 CDD:132736 40/247 (16%)
nhr-234NP_496701.1 ZnF_C4 12..81 CDD:197701 26/74 (35%)
HOLI 187..337 CDD:214658 29/184 (16%)

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