DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment EcR and nhr-225

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_503628.2 Gene:nhr-225 / 188974 WormBaseID:WBGene00020849 Length:390 Species:Caenorhabditis elegans


Alignment Length:460 Identity:85/460 - (18%)
Similarity:161/460 - (35%) Gaps:153/460 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 CLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACEMDMYMRRKCQE---------- 318
            |.:||.:|.|.|:.|:||..|..||||| :||              .::.:|||.          
 Worm     8 CRICGMKAHGTHFGAVTCRACAAFFRRS-SKS--------------KWINKKCQSKTGNKARCFC 57

  Fly   319 --CRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKK 381
              |||::||..||                      |..|.      |:|.:.:|.:...      
 Worm    58 RPCRLRRCLDNGM----------------------EDTKF------QYGRDLNLPADDN------ 88

  Fly   382 EILDLMTCEPPQHATIPLLPD--------EILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPS 438
                            ||:|.        |.|..|.:::..|      .::..:        ||.
 Worm    89 ----------------PLVPSISNFVGRPEFLLFCDSKSSGS------KIVIDV--------QPL 123

  Fly   439 EEDLRRIM----SQPDENESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKAC 499
            .::..|::    :.|...|||       :.::| |.::::....|.:..|.||.:.:.:.::   
 Worm   124 IKEASRLLRNGCATPLRAESQ-------LKKLT-LGLKVMQCDLKNVKCFDKIGKAEFLDII--- 177

  Fly   500 SSEVMMLRMARRYDHSSDSIFFANNRSYTRD-SYKMAGMADNIEDLLHFCRQMFSMKVDNV---- 559
              |...:...:...|      |.:.:...:| ..|:|....||...:|.|......:..|.    
 Worm   178 --EFYFMAGVKWVSH------FDHFQKLDQDLQMKLAQSIWNIFIKIHKCSNTAKYRKSNSIGTH 234

  Fly   560 EYALLTAIVI-----------FSDRP-----------GLEKAQLVEA-IQSYYIDTLRIYILNRH 601
            :..:|..:.:           .||.|           ....:::||| |:....|....|::.:.
 Worm   235 DQKILRNMCVDREKVKFDFSWMSDYPQHFVKKYMFTHNTYDSEIVEALIKLDPTDVELTYMIAQL 299

  Fly   602 CGDSMSLVFYAKLLSILTELRTLGNQNAEMCFSLKLKNRKLPKFLEEIWDVHAIPPSVQSHLQIT 666
            |.:.....|..::|.:....:...:.:....::.:| ||:  ::|:.:.|...|...:|..:..|
 Worm   300 CFEYAGKRFQGEILKVTDHFQQTLSNDLHHYYTSEL-NRE--RYLKRLTDFMKINKLIQKSIWET 361

  Fly   667 QEENE 671
            :...|
 Worm   362 RPHRE 366

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 27/98 (28%)
NR_LBD_EcR 420..652 CDD:132736 41/263 (16%)
nhr-225NP_503628.2 ZnF_C4 8..70 CDD:197701 25/76 (33%)
Hormone_recep 160..364 CDD:278530 36/217 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165642
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.