DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-216

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001343620.1 Gene:nhr-216 / 188325 WormBaseID:WBGene00020385 Length:490 Species:Caenorhabditis elegans


Alignment Length:473 Identity:94/473 - (19%)
Similarity:160/473 - (33%) Gaps:169/473 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   254 GPAPRVQEELCLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFG-RACEMDMYMRRKCQ 317
            ||     ::.|.||...|.|.|:...||..|..||||.|.....|.|... :.|.:|...|..|:
 Worm    56 GP-----KQKCRVCNLEAHGMHFGVQTCRPCAAFFRRIVVLDLKYTCVSNTQKCNVDGRGRNVCR 115

  Fly   318 ECRLKKCLAVGMRPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKE 382
            :||.|||:||||..:.|               |..:|......||..||      |.|:...|:.
 Worm   116 DCRYKKCIAVGMTTDNV---------------QYNRDSHNNKNSSGSGG------GRGRGKNKRN 159

  Fly   383 ILDLMTCEPPQHATIPLLP------DEIL---AKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPS 438
            ::.::|.|.....:..:.|      ||..   .....|..|.|              ....|:..
 Worm   160 VMMMLTDEEEAAGSSTVKPGGSIKGDESFCSDGSSSTRGNPQL--------------DPDAERRD 210

  Fly   439 EEDLRRIMS---------QPDENESQTDVSFRHITEITILTVQLI-----------VEFAKGLPA 483
            :|::.:|:|         .|.|..:|..     |.::..||..|:           ::|...:.|
 Worm   211 DEEMDKIISDLKHLFVEYSPPEMINQCS-----INQLQRLTHSLVLYRQNQQSANQIKFCDTINA 270

  Fly   484 FT------------------------KIPQEDQITLLKACSSEVMMLRMARRYDHSSDSIFFANN 524
            ||                        |:..|.:|..:|      |...:..|.:.:..|:.....
 Worm   271 FTDGKAHLQRKSEKFSKWVKCVDFFDKLSDEQKIDTVK------MSFTVFDRLERAQMSVKIFGE 329

  Fly   525 RSYTR-----------------------------DSYKMAGMADNIEDLL-HFCRQMFSMKVDNV 559
            :|.|.                             ::|..|....:::.:: ..|:.::.:::.:.
 Worm   330 KSITEKKTTLSSYCAVDWKNVKINPETAINTEQANNYVKAEFHAHVDSIIDEVCKPLYELQLSDT 394

  Fly   560 EYA-LLTAIVIFSD----RPGLEKA--QLVEAIQS----YY-------IDTLRIYILNRHCGDSM 606
            |.| :|..::::..    .|.|.|.  ||.|.|.:    ||       .||.||           
 Worm   395 ETAFILVQVLVYHGGEKVTPELVKMFDQLRETIATDLHLYYTKESQTGTDTNRI----------- 448

  Fly   607 SLVFYAKLLSILTELRTL 624
                 .|::|::..::.:
 Worm   449 -----LKMMSVVNAMKKI 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 30/90 (33%)
NR_LBD_EcR 420..652 CDD:132736 45/297 (15%)
nhr-216NP_001343620.1 ZnF_C4 60..130 CDD:197701 29/69 (42%)
Hormone_recep 287..474 CDD:306586 30/197 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165514
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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