DRSC/TRiP Functional Genomics Resources

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Protein Alignment EcR and nhr-26

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_510119.1 Gene:nhr-26 / 188212 WormBaseID:WBGene00011568 Length:334 Species:Caenorhabditis elegans


Alignment Length:426 Identity:80/426 - (18%)
Similarity:146/426 - (34%) Gaps:147/426 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 CLVCGDRASGYHYNALTCEGCKGFFRRSVTKSAVYCCKFGRACE---MDMYMRRKCQECRLKKCL 325
            |.||.::.:|::|...:|..||.||||::....|..|.....|.   :|. ...:|:.||..||:
 Worm     8 CKVCNEKTTGFNYGVQSCNACKMFFRRALDTPKVLKCGRDGNCPTIVLDS-GESQCRFCRFHKCI 71

  Fly   326 AVGM-------RPECVVPENQCAMKRREKKAQKEKDKMTTSPSSQHGGNGSLASGGGQDFVKKEI 383
            .|||       .|..::                  :|:..                 .|..:::|
 Worm    72 IVGMIFLDAVDDPTNII------------------NKLLV-----------------MDTKRRDI 101

  Fly   384 LDLMTCEPPQHATIPLLPDEILAKCQARNIPSLTYNQLAVIYKLIWYQDGYEQPSEEDLRRIMSQ 448
              .:.|..|:..|:    ||:.::   |:.|.                                 
 Worm   102 --FLNCTIPESLTV----DEVFSR---RSFPF--------------------------------- 124

  Fly   449 PDENESQTDVSF------RHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMMLR 507
             :..:..|..:|      .|::         .:.|.:.|.....:..:|.|.:.|......::|.
 Worm   125 -EPRKPGTVFNFCDWGVINHLS---------CISFIRQLDFIKFLSSQDTIAIFKYSHLMYLILV 179

  Fly   508 MARR--------YDHSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSMKVDNVEYALL 564
            .|.|        .:|......|.....|.....|.  :.::|..||  ..::..:|:.:.|:.||
 Worm   180 TAMRSYLCKEAAMNHPGKVDVFPEEAQYAAGYNKQ--LLNDIRCLL--VGRLSEIKITHEEFILL 240

  Fly   565 TAIVIFSDRPG---LEKAQ--LVEAIQSYYIDTLRIY--ILNRHCGDSMSLVFYAKLLSILTEL- 621
            :.|::.:  ||   |.|:.  ::.:.|..:...|..|  |.|..||.:.    :.::||:...: 
 Worm   241 SVIILCN--PGATNLSKSGRIILASNQERFSSILLHYCLITNSKCGPAR----FNEILSLCHVVS 299

  Fly   622 RTLGN-QNAEMCFSLKLKNRKLPKFLEEIWDVHAIP 656
            |||.: .|....:||                ||.:|
 Worm   300 RTLSDLDNLTCLYSL----------------VHTVP 319

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 25/96 (26%)
NR_LBD_EcR 420..652 CDD:132736 42/254 (17%)
nhr-26NP_510119.1 ZnF_C4 8..75 CDD:197701 22/67 (33%)
HOLI 141..301 CDD:214658 34/178 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165594
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

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