DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment EcR and nhr-210

DIOPT Version :9

Sequence 1:NP_001163061.1 Gene:EcR / 35540 FlyBaseID:FBgn0000546 Length:878 Species:Drosophila melanogaster
Sequence 2:NP_001350970.1 Gene:nhr-210 / 187830 WormBaseID:WBGene00020015 Length:403 Species:Caenorhabditis elegans


Alignment Length:446 Identity:88/446 - (19%)
Similarity:168/446 - (37%) Gaps:99/446 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 CLVC-GDRASGYHYNALTCEGCKGFFRRSV-TKSAVYCCKFGRACEMDMYMRRKCQECRLKKCLA 326
            |.|| .:...|.|:..:.|..|..||||:. :|.....|: ..:|:.:   :..|:.|||:|||.
 Worm     4 CKVCTAEGCHGTHFGTICCRACAAFFRRTAFSKLRNSKCR-SASCDKE---KSFCKPCRLRKCLE 64

  Fly   327 VGM--------RPECVVPENQCAMKRREKKAQKEK-DKMTTSPSSQHGGNGSLASGGGQDFV-KK 381
            |||        |......|:....|:.|.|..|:. .|:..|.....|..|.:.....|... :|
 Worm    65 VGMETSNFQYHRDSLHDSESSSVFKKLEAKHSKQTISKIPKSFECFVGRPGMILFWDAQKSKHRK 129

  Fly   382 EILDLMTCEPPQHATIPLLPDE--ILAKCQARNIPSLTYNQ---LAVIYKLIWYQDGYEQPSEED 441
            ..:|           :..|.||  ::.:..:.|: .:..||   ||:..|::        .....
 Worm   130 TFID-----------VSYLLDEATMIFRQPSENV-HIFENQLHRLAIGLKVV--------SGNTK 174

  Fly   442 LRRIMSQPDENESQTDVSFRHITEITILTVQLIVEFAKGLPAFTKIPQEDQITLLKACSSEVMML 506
            ..|.:::.|:.|......::.:|         :.::......|..:.::.::|||::......:|
 Worm   175 NYRFLTKIDQRELSDTWQWQFLT---------VAKWLTHFKQFDALEEKVKLTLLQSTWHVWSVL 230

  Fly   507 RMARRYDHSSDSIFFANNRSYTRDSYKMAGMADNIEDLLHFCRQMFSMKVDNVEY---------- 561
                  ||...|.  |::|| ..::.|...:.          |:...|.:.||.:          
 Worm   231 ------DHHFASA--AHHRS-NPNALKTHAVT----------RRGVMMDMTNVHFDANWLSGYPS 276

  Fly   562 ALLTAIVIFSDR----PGLEKAQLVEAIQSYYIDTLRIYILNRHC-GDSMSLVFYAKLLSILTEL 621
            |.|...:....|    ..||..|..|..:::.:..|......:.| |:.:.|..|.:.: :.|:|
 Worm   277 AELNRFLHVPSRFDITAALEALQPTEMERTFMLVQLSFEYAGKRCQGEMLQLTDYFQQV-LATDL 340

  Fly   622 RTLGNQNAEMCFSLKLKNRKLPKFLEEIWDVHAIPPSVQSHLQITQEENERLERAE 677
            .           ...:|..::.|:.:.:..:..:..::|..|   .|:..|:|.|:
 Worm   341 H-----------DYYVKELRMEKYFDRLAKLMKVNNAIQKKL---WEQRPRIELAK 382

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
EcRNP_001163061.1 NR_DBD_EcR 261..351 CDD:143535 29/96 (30%)
NR_LBD_EcR 420..652 CDD:132736 40/249 (16%)
nhr-210NP_001350970.1 ZnF_C4 4..67 CDD:197701 22/66 (33%)
Hormone_recep 172..383 CDD:306586 42/254 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160165640
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.